| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1046001 | NA (NA) | 14 (0.820) | 11/166 | 0.4 | 100% | intergenic (+15/+418) | BW25113_RS05135/cspH | IS1‑like element IS1D family transposase/cold shock‑like protein CspH |
| ? | NZ_CP009273 | = 1903046 | 0 (0.000) | intergenic (‑23/‑136) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein | |||||
GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1045929‑1046001‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGCGCA < NZ_CP009273/1903046‑1902959 GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAG > 1:46863/1‑90 CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGGTTGGAGTGAAAAAGTTTCGA > 2:176384/1‑90 ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGAT > 2:470810/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTT > 2:36714/1‑90 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGG < 1:503951/78‑1 GAACATAAAACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGG > 2:503951/1‑78 ACACTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTG < 2:49752/90‑1 CTATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTG > 2:261264/1‑90 TATCAATAAGTTGGAGTCATTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGG > 1:184907/1‑90 TTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGC < 1:261264/90‑1 TTACCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGC > 1:338959/1‑90 CCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGCGCA < 1:470810/90‑1 CCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGCGCA < 2:220454/90‑1 CCAGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGCGCA < 2:47606/90‑1 GGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NZ_CP009273/1045929‑1046001‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGTAGGTGAAACGGAGATTGGAGTGAAAAAGTTTCGATGGGTCGTTCTGGTTGTCGTGGTGTTGGCTTGCTTGCTGCTTTGGGCGCA < NZ_CP009273/1903046‑1902959 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |