New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	1203246 =	4 (0.230)	17 (1.230)	13/134	0.1	89.0%	coding (290/630 nt)	BW25113_RS05990	hypothetical protein
	?	NZ_CP009273	1205075 =	1 (0.070)					coding (40/540 nt)	BW25113_RS06005	phage tail protein

TCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT  >  NZ_CP009273/1204994‑1205142                                                                                  |                                                                    tcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGa                                                             >  2:442809‑M2/82‑90 (MQ=255)                 tatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa                                             <  2:479818‑M2/25‑1 (MQ=255)                    gaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc                                          >  2:464801‑M2/63‑90 (MQ=255)                    gaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc                                          >  1:261905‑M2/63‑90 (MQ=255)                    gaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc                                          >  1:364621‑M2/63‑90 (MQ=255)                      aaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaa                                        <  2:449993‑M2/30‑1 (MQ=255)                         cggtgcgtcctaatgtagccgttgctgcatttagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg                                     >  2:386228‑M2/58‑90 (MQ=255)                         cggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg                                     >  2:253639‑M2/58‑90 (MQ=255)                              cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGcatc                                <  1:253639‑M2/38‑1 (MQ=255)                                   taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc                           <  1:156048‑M2/43‑1 (MQ=255)                                   taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc                           <  2:278989‑M2/43‑1 (MQ=255)                                   cGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTcc                           <  1:22291/90‑1 (MQ=255)                                                    cattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa          <  1:442809‑M2/60‑1 (MQ=255)                                                     attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAt         <  2:189354‑M2/61‑1 (MQ=255)                                                           ttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa   <  2:261905‑M2/67‑1 (MQ=255)                                                            tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt  <  1:464801‑M2/68‑1 (MQ=255)                                                             ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                       <  2:118175‑M2/47‑1 (MQ=255)                                                             ttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCt                       >  1:118175‑M2/22‑68 (MQ=255)                                                                                  |                                                                    TCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAT  >  NZ_CP009273/1204994‑1205142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.