Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2462995	2463040	46	3 [1]	[1] 3	BW25113_RS12270	hypothetical protein

ATATTTATTCATTATATGCGATATTTACTTCATATATAAAAACAGAAAGGTATGTAACTTTATTTACATTCTTTATTTTAGCTTTTCTTA  >  NZ_CP009273/2462917‑2463006                                                                              |             atatTTATTCATTATATGCGATATTTACTTCATATATAAAAACAGAAAGGTATGTAACTTTATTTACATTCTTTATTTTAGCTTTTCTTa  <  1:388936/90‑1 (MQ=255)                    gATATTTACTTCATATATAAAAACAGAAAGGTATGTAACTTTATTTACATTCTTTAttt              >  1:49813/1‑59 (MQ=255)                    gATATTTACTTCATATATAAAAACAGAAAGGTATGTAACTTTATTTACATTCTTTAttt              <  2:49813/59‑1 (MQ=255)                                                                              |             ATATTTATTCATTATATGCGATATTTACTTCATATATAAAAACAGAAAGGTATGTAACTTTATTTACATTCTTTATTTTAGCTTTTCTTA  >  NZ_CP009273/2462917‑2463006

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑