Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2988548	2988599	52	3 [1]	[1] 3	BW25113_RS14850/BW25113_RS26010	response regulator transcription factor/hypothetical protein

TTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAAT  >  NZ_CP009273/2988502‑2988591                                              |                                             ttCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAaat                                              <  1:259968/46‑1 (MQ=255) ttCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAaat                                              >  2:259968/1‑46 (MQ=255) ttCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAAt  >  2:218172/1‑90 (MQ=255)                                              |                                             TTCCATTATTATTATAAGCAAAATCCAAAGAATACATTGATGAAATAATAATGAAATATAATTAAAAATAAAATTTTTGCGTAAAAAAAT  >  NZ_CP009273/2988502‑2988591

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑