| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 822,410 | 0 | A | T | 53.8% | 5.8 / 16.0 | 13 | I100N (ATT→AAT) | ybhS | ABC transporter permease |
| Reads supporting (aligned to +/- strand): ref base A (6/0); new base T (0/7); total (6/7) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.83e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.56e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTCGGTGATCACCTGAATCGGTGCGGTGGCGTTGGCGCGCTCCATCTGTTCCGCAAAATCCACCGGAATAA‑CCACCAGACCGCGAATTTTCCCCGCCTGCATTTTGGCGATCAGTTCCTGACGGTTATCGCTGATGGTGGCGTCGATGTAGGGCGAACC > NZ_CP009273/822325‑822483 | gTCGGTGATCACCTGAATCGGTGCGGTGGCGTTGGCGCGCTCCATCTGTTCCGCAAAATCCACCGGAATAA‑CCACCAGACCGCGAAtttt > 1:127321/1‑90 (MQ=255) gtgcggtgGCGTTGGCGCGCTCCATCTGTTCCGCAAAATCCACCGGAATAA‑CCACCAGACCGCGAATTTTCCCCGCCTGCATTTTGGCGa > 1:202607/1‑90 (MQ=255) tgcggtgGCGTTGGCGCGCTCCATCTGTTCCGCAAAATCCACCGGAATAA‑CCACCAGACCGCGAATTTTCCCCGCCTGCATTTTGGCGAt > 1:143340/1‑90 (MQ=255) ggggtgGCGTGGGCGCGCTCTATTTGTCCCAAAAACCCCACCGAAAAAA‑CCCCCAGCCCGAAATTTTCCCCCGCCTGCATTTTGGCGATc < 1:288073/88‑1 (MQ=255) gggtgGCGTTGGCGCCCCCCATCTGTCCCGAAAAACCCCCCGAAATAA‑CCACCAGCCCGCGATTTTTCCCCGCCTGCATTTTGGCGATCa < 2:202607/89‑1 (MQ=255) ggtgGCGTTGGCGCGCTCCATCTGTTCCGCAAAATCCACCGGAATAA‑CCACCAGACCGCGAATTTTCCCCGCCTGCATTTTGGCGATCAg > 2:359940/1‑90 (MQ=255) gTTGGCGCGCTCCATCTTTCCCGAAAAACCCCCCGAAATAC‑CCCCCAGCCCGCGATTTTCCCCCGCCTGCATTTTGGCGATCAGTTCCTg < 2:127321/90‑1 (MQ=255) gTTGGCGCGCTCCATCTGTTCCGCAAAATCCACCGGAATAA‑CCACCAGACCGCGAATTTTCCCCGCCTGCATTTTGGCGATCAGTTCCTg > 1:220973/1‑90 (MQ=255) tgggCGCCCTCCTTTTGTTCCGCAAAACCCCCGGGAATAC‑CCCCCAGGCCGCTATTTTCCCCCGCCTGCATTTTGGCGATCAGTTCCTGa < 2:45002/88‑1 (MQ=255) cgcTCCATCTGTTCCGCAAAATCCACCGGAATAA‑CCACCAGACCGCGAATTTTCCCCGCCTGCATTTTGGCGATCAGTTCCTGACGGTTa > 1:303563/1‑90 (MQ=255) cccccGGAAAAACCCCCCAGCCCGGGATTTTTCCCCGCCTGCATTTTGGCGATCAGTTCCTGACGGTTATCGCTGATGGTGGCGTCGATg < 2:303563/87‑1 (MQ=255) aa‑CCCCCAGCCCGGTATTTTCCCCCGCCTGCATTTTGGCGATCAGTTCCTGACGGTTATCGCTGATGGTGGCGTCGATGTAGGGCGAAcc < 2:220973/90‑1 (MQ=255) aa‑CCCCCAGACCGCAATTTTCCCCCGCCTGCATTTTGGCGATCAGTTCCTGACGGTTATCGCTGATGGTGGCGTCGATGTAGGGCGAAcc < 1:359940/90‑1 (MQ=255) | GTCGGTGATCACCTGAATCGGTGCGGTGGCGTTGGCGCGCTCCATCTGTTCCGCAAAATCCACCGGAATAA‑CCACCAGACCGCGAATTTTCCCCGCCTGCATTTTGGCGATCAGTTCCTGACGGTTATCGCTGATGGTGGCGTCGATGTAGGGCGAACC > NZ_CP009273/822325‑822483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |