| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,511,988 | C→A | E146* (GAG→TAG) | aroK ← | shikimate kinase AroK |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,511,988 | 0 | C | A | 100.0% | 56.7 / NA | 17 | E146* (GAG→TAG) | aroK | shikimate kinase AroK |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (8/9); total (8/9) | |||||||||||
TGCTTTCCAGCATGTGAATAATCTGGTTTGCAACCACTTTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTT > NZ_CP009273/3511907‑3512069 | tGCTTTCCAGCATGTGAATAATCTGGTTTGCAACCACTTTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTATTCATACa < 1:473186/90‑1 (MQ=255) ttCCAGCATGTGAATAATCTGGTTTGCAACCACTTTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTATTCATACAGCgg > 2:255137/1‑90 (MQ=255) ccAGCATGTGAATAATCTGGTTTGCAACCACTTTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTATTCATACAGCGGAt < 1:298568/90‑1 (MQ=255) tGGTTTGCAACCACTTTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAAc > 2:137038/1‑90 (MQ=255) cTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACgcggc < 1:381740/90‑1 (MQ=255) cTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACgcggc < 1:445311/90‑1 (MQ=255) ttGATCATCAGTACGAATGGTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACg < 1:212984/68‑1 (MQ=255) ttGATCATCAGTACGAATGGTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACg > 2:212984/1‑68 (MQ=255) gTACGAATGGTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACg < 1:500612/90‑1 (MQ=255) aTGGTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTgcagc > 2:237692/1‑90 (MQ=255) ggTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGcggcgg > 2:87479/1‑72 (MQ=255) ggTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGcggcgg < 1:87479/72‑1 (MQ=255) ggTCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCaa > 1:504725/1‑90 (MQ=255) tCACGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACg > 1:42871/1‑90 (MQ=255) aCGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCaa > 1:448420/1‑76 (MQ=255) aCGTCGGCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCaa < 2:448420/76‑1 (MQ=255) ggCAATCTATTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGttt < 1:237692/90‑1 (MQ=255) | TGCTTTCCAGCATGTGAATAATCTGGTTTGCAACCACTTTAGCGCTTTGATCATCAGTACGAATGGTCACGTCGGCAATCTCTTCATACAGCGGATTGCGTTCATTGGCCAACGCTTCCAGAACTTCACGCGGCGGTGTTTCAACGTGCAGCAACGGGCGTTT > NZ_CP009273/3511907‑3512069 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |