Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4241742	4241751	10	2 [1]	[0] 4	BW25113_RS20970	SopA family protein

ATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATT  >  NZ_CP009273/4241652‑4241745                                                                                          |     atgaAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACa      <  1:333284/90‑1 (MQ=255)     aGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGGTCGATTTTATTAACAGAtt  >  1:126386/1‑90 (MQ=255)                                                                                          |     ATGAAGATAACAAGTTCGATGATTTTATGCGTCAACATCGATTCAGTGAGGTGAATTTCGATACCCAACAGATGATCGATTTTATTAACAGATT  >  NZ_CP009273/4241652‑4241745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑