Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1641055	1641067	13	3 [1]	[1] 3	flxA/BW25113_RS23105	FlxA‑like family protein/hypothetical protein

TTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGAC  >  NZ_CP009273/1641066‑1641155   |                                                                                        ttGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGAc  >  2:1566/1‑90 (MQ=255)   gTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGc                                            <  1:314775/46‑1 (MQ=255)   gTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGc                                            >  2:314775/1‑46 (MQ=255)   |                                                                                        TTGTATCATTTCTGATAGTTAACATTACAAGATATAAGTAATGGACGCACTCCCAATTAGTCTATTTAAATCGCCACGAGTTTAACTGAC  >  NZ_CP009273/1641066‑1641155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑