| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 3606532 | 46 (0.970) | 3 (0.070) | 3/142 | 3.2 | 7.2% | coding (204/588 nt) | acpT | 4'‑phosphopantetheinyl transferase AcpT |
| ? | NZ_CP009273 | = 3606543 | 36 (0.860) | coding (215/588 nt) | acpT | 4'‑phosphopantetheinyl transferase AcpT | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAA > NZ_CP009273/3606446‑3606607 | ttGCTTTCGCCCACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTc < 2:608944/90‑1 (MQ=255)ttGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTc < 1:532681/90‑1 (MQ=255) tGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCa > 1:1178267/1‑90 (MQ=255) ttCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACtt < 1:403965/90‑1 (MQ=255) tCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTa > 2:366467/1‑90 (MQ=255) cGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACtt < 1:1258249/88‑1 (MQ=255) cGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACtt > 2:289148/1‑88 (MQ=255) cGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACtt > 2:1258249/1‑88 (MQ=255) cGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACtt < 1:289148/88‑1 (MQ=255) cGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTaa < 1:1368971/90‑1 (MQ=255) cacaCGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGc < 2:873150/90‑1 (MQ=255) ccccGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTg < 1:866635/90‑1 (MQ=255) ccccGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTg < 2:667364/90‑1 (MQ=255) acccGCTACCGGGGATCATCTATGGGGAACAAGGGAAACCTGCATTGGCGCCGGAAATGCCGTTATGGTTCAACTTAAGCCATAGCGGTg < 1:1133277/89‑1 (MQ=255) gCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTaa > 1:1373965/1‑74 (MQ=255) gCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTaa < 2:1373965/74‑1 (MQ=255) gCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGa > 1:1478416/1‑90 (MQ=255) agaTCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGccc < 1:300019/90‑1 (MQ=255) agaTCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGccc < 2:597188/90‑1 (MQ=255) agaTCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGccc < 2:804569/90‑1 (MQ=255) gaTCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCct > 1:1132706/1‑90 (MQ=255) gaTCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCct > 1:1072445/1‑90 (MQ=255) tcatcTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCctgc > 2:409492/1‑90 (MQ=255) tcatcTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCctgc < 1:366467/90‑1 (MQ=255) atcTATGGCGAAAAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCctgct > 2:866172/1‑89 (MQ=255) atcTATGGCGAAAAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCctgct < 1:866172/89‑1 (MQ=255) tcTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGt < 2:1178267/90‑1 (MQ=255) aTGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGt < 1:141658/87‑1 (MQ=255) aTGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGt > 2:141658/1‑87 (MQ=255) aTGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGa > 2:1187551/1‑90 (MQ=255) gAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGtgat > 2:645834/1‑90 (MQ=255) gAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGtgat > 1:1466297/1‑90 (MQ=255) gAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGtgat > 2:283986/1‑90 (MQ=255) aaCAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTc > 2:1108742/1‑44 (MQ=255) aaCAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTc < 1:1108742/44‑1 (MQ=255) aCAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGtgatga > 2:1111093/1‑90 (MQ=255) aGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTc < 2:877585/40‑1 (MQ=255) aGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTc > 1:877585/1‑40 (MQ=255) cAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGa < 2:1072445/90‑1 (MQ=255) cTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCg < 2:1418875/90‑1 (MQ=255) cTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCg > 1:1418875/1‑90 (MQ=255) cTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCg < 1:1055220/90‑1 (MQ=255) cATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCt > 1:601546/1‑90 (MQ=255) tttGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGc < 2:341595/90‑1 (MQ=255) tGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATATCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGa > 1:224691/1‑90 (MQ=255) gAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGaa < 2:1466297/90‑1 (MQ=255) | TTGCTTTCGCACACGCTTTCCCCGCTACCGGAGATCATCTATGGCGAACAAGGCAAACCTGCATTTGCGCCGGAAATGCCGCTATGGTTCAACTTAAGCCATAGCGGTGACGATATCGCCCTGCTGTTGAGTGATGAAGGCGAAGTCGGCTGCGATATCGAA > NZ_CP009273/3606446‑3606607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |