| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 937,169 | 0 | T | G | 56.5% | ‑3.7 / 18.5 | 23 | V252G (GTG→GGG) | dmsA | dimethylsulfoxide reductase subunit A |
| Reads supporting (aligned to +/- strand): ref base T (2/8); new base G (13/0); total (15/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.18e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.21e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACACCGGTGCCGGG > NZ_CP009273/937080‑937254 | tGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGt < 1:1303484/90‑1 (MQ=255) aGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTAc < 1:117892/90‑1 (MQ=255) aGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTAc < 1:1448082/90‑1 (MQ=255) aGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTAc < 2:56285/90‑1 (MQ=255) gCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCt > 2:756973/1‑90 (MQ=255) gTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATCt > 1:1008382/1‑90 (MQ=255) cGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGc < 1:756973/90‑1 (MQ=255) cAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGCTTACTATTTTGAAAAGGCACGccc > 2:1272712/1‑89 (MQ=255) aGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAg < 1:948364/90‑1 (MQ=255) gTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGACTTTCTATCTTGAAAAGGGACGCCAGa > 2:276994/1‑90 (MQ=255) tAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATg < 2:761192/90‑1 (MQ=255) aGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGGGGGGGGGGTTATTATCTTTAACAGGCACGGCAGAAAACTTATgg > 1:182093/1‑89 (MQ=255) gCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTTAAAAGGCACCCCAGAAATCTAATGcccc > 2:456182/1‑89 (MQ=255) gCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGAGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAg > 2:230072/1‑76 (MQ=255) gCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGAGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAg < 1:230072/76‑1 (MQ=255) gTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCAt < 2:1091276/90‑1 (MQ=255) aaCCCTGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATCTTGAAAAGGGACGCCAGAAAACTAATGCCCGCCTGatcatcatc > 2:1420495/1‑90 (MQ=255) tGGCGAAACGCGAATGAGTGGCGGTGGGGGGGGTTACTATTTTTAAAAAGCACCCCCGAAAAATTATGGCCGCCTGATCATCATCGAttc > 1:1055103/1‑88 (MQ=255) tGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTTCTATTTTTAAAAAGCACCCCCGAAAAATAAAGGCCGCCTGATCATCATCGGTcc > 1:214498/1‑90 (MQ=255) tGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATTTTTAACAAGCACGCCAGAAAACTAATGCCCGCATGATCATCATCGATcc > 2:1009288/1‑90 (MQ=255) tGGCGAAACGCGAATGAGTGGCGGTGGGGGGGCTTACTATTTTGAACAAGCACGCCAGAAATCTAATTCCCCCCTGATCATCATCGATcc > 2:1385191/1‑90 (MQ=255) tGGCGAAACGCGAATGAGTGGCGGTGGGGGGACTTACTATCTTTAAAAAGCACCCCAGAAAACTAATGCCCCCCTGATCATCATCGATcc > 2:168228/1‑90 (MQ=255) aCGCGAATGAGTGGCGGTGGGGGGACTTACTATTTTGAACAGGCACCCCCGAAATCTAATTCCCGCATGATCATCATCGATCCGCGCtat > 2:360141/1‑90 (MQ=255) ggggTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACACCGGTGCCggg > 2:550105/1‑90 (MQ=255) | TGGCAACAGCCCGTCGGATATCGAAAACAGTAAGCTGGTAGTGCTGTTTGGTAATAACCCTGGCGAAACGCGAATGAGTGGCGGTGGGGTGACTTACTATCTTGAACAGGCACGCCAGAAATCTAATGCCCGCATGATCATCATCGATCCGCGCTATACCGACACCGGTGCCGGG > NZ_CP009273/937080‑937254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |