| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 1903072 | 1 (0.090) | 14 (1.260) | 10/166 | 0.2 | 93.3% | intergenic (‑49/‑110) | mgrB/yobH | PhoP/PhoQ regulator MgrB/YobH family protein |
| ? | NZ_CP009273 | = 2096424 | NA (NA) | intergenic (‑68/+3) | BW25113_RS10605/wbbL | IS5‑like element IS5 family transposase/N‑acetylglucosaminyl‑diphospho‑decaprenol L‑rhamnosyltransferase WbbL | |||||
AACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTAAGCGA > NZ_CP009273/1902983‑1903158 | ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAg > 2:111710‑M2/87‑90 (MQ=255) accacGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGgga > 2:10870‑M1/1‑87 (MQ=255) aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGcc < 1:111710‑M2/16‑1 (MQ=255) aGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaa < 1:327389‑M1/90‑16 (MQ=255) gACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccc < 1:10870‑M1/90‑21 (MQ=255) gACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccc < 2:136770‑M1/90‑21 (MQ=255) aCTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttg > 1:109227‑M1/1‑51 (MQ=255) gactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCgg > 1:241220‑M2/46‑90 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCgc > 2:258467‑M2/36‑90 (MQ=255) acctacctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccataga > 2:30812‑M1/1‑34 (MQ=255) acctacctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccct < 1:324414‑M1/55‑22 (MQ=255) acctacctTATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccct > 2:324414‑M1/1‑34 (MQ=255) aatttccccgcttattcgcaccttccTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAg < 2:91304‑M2/64‑1 (MQ=255) tATGTCATTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 2:237706‑M1/1‑26 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat > 2:1896‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag < 1:65510‑M1/80‑61 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag > 2:65510‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:285762‑M1/1‑20 (MQ=255) aTTAAACTAGCATGCGTTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat < 2:285762‑M1/73‑54 (MQ=255) ttagttaAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTAAGCGa < 2:241220/90‑1 (MQ=255) | AACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATGTCATTAAACTAGCATGCGTTAGTTAAACAGCGCCTAACTATGTCGATATTCGTGCTTTTTCGGAATGAGTCGCTTGCTTCAGCGCATATTGCCGCTACGATTAAGCGA > NZ_CP009273/1902983‑1903158 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |