Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1189827	1189886	60	2 [1]	[1] 2	rluE	23S rRNA pseudouridine(2457) synthase RluE

TTAAACATTTTGCATCCTTAATCTGTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTC  >  NZ_CP009273/1189737‑1189830                                                                                          |     ttAAACATTTTGCATCCTTAATCTGTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATc      >  2:40951/1‑90 (MQ=255)     aCATTTTGCATCCTTAATCTGTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTc  <  2:60779/90‑1 (MQ=255)                                                                                          |     TTAAACATTTTGCATCCTTAATCTGTCACTTCTCGCCATTCACCATTGGCAAGATTATCCAAAGAGTAATCACCCATCGCATAGCGAATCAGTC  >  NZ_CP009273/1189737‑1189830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑