Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1282184	1282241–1282212	29–58	2 [0]	[1] 2	BW25113_RS23085	RtT sRNA

TTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGAT  >  NZ_CP009273/1282144‑1282183                                        | ttttGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGAt  <  1:236566/40‑1 (MQ=255) ttttGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGAt  >  2:236566/1‑40 (MQ=255)                                        | TTTTGATTATTTAAGGAAGCGATGGTGGTGGGGGAAGGAT  >  NZ_CP009273/1282144‑1282183

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑