Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1388687	1388705	19	2 [0]	[1] 2	mppA	murein tripeptide ABC transporter substrate‑binding protein MppA

ACACTTCAGAAAACCATCAAAAAATTGCGATTGCTGTAGCATCGATG  >  NZ_CP009273/1388640‑1388686                                               | acacTTCAGAAAACCATCAAAAAATTGCGATTGCTGTAGCATCGAtg  <  1:280226/47‑1 (MQ=255) acacTTCAGAAAACCATCAAAAAATTGCGATTGCTGTAGCATCGAtg  >  2:280226/1‑47 (MQ=255)                                               | ACACTTCAGAAAACCATCAAAAAATTGCGATTGCTGTAGCATCGATG  >  NZ_CP009273/1388640‑1388686

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑