Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2553488	2553564	77	4 [1]	[1] 3	intZ/BW25113_RS12740	integrase arm‑type DNA‑binding domain‑containing protein/hypothetical protein

TAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTT  >  NZ_CP009273/2553398‑2553492                                                                                          |      tAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtgt       <  2:290560/90‑1 (MQ=255)      gCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGttt  <  2:100463/90‑1 (MQ=255)                        aatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtgt       >  1:50931/1‑67 (MQ=255)                        aatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTtgtgt       <  2:50931/67‑1 (MQ=255)                                                                                          |      TAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTT  >  NZ_CP009273/2553398‑2553492

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑