Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1412125	1412244	120	2 [1]	[1] 5	BW25113_RS07100	conserved protein, Rac prophage

GGTAAGCACATTTTATTTTCTTAGTCATCACCATGACTCCGCCTTTACAGGTAAACCATCACGACCGAGGAAGACTTTAATCATGCGGTC  >  NZ_CP009273/1412238‑1412327        |                                                                                   ggtAAGCACATTTTATTTTCTTAGTCATCACCATGACTCCGCCTTTACAGGTAAACCATCACGACCGAGGAAGACTTTAATCATGCGGTc  <  2:295678/90‑1 (MQ=255)        acaTTTTATTTTCTTAGTCATCACCATGACTCCGCCttt                                              <  1:158542/39‑1 (MQ=255)        acaTTTTATTTTCTTAGTCATCACCATGACTCCGCCttt                                              >  2:158542/1‑39 (MQ=255)        acaTTTTATTTTCTTAGTCATCACCATGACTCCGCCTTTACAGGTAAACCATCACGACCGAGGAAGACTTTAATCATg       <  1:79290/78‑1 (MQ=255)        acaTTTTATTTTCTTAGTCATCACCATGACTCCGCCTTTACAGGTAAACCATCACGACCGAGGAAGACTTTAATCATg       >  2:79290/1‑78 (MQ=255)        |                                                                                   GGTAAGCACATTTTATTTTCTTAGTCATCACCATGACTCCGCCTTTACAGGTAAACCATCACGACCGAGGAAGACTTTAATCATGCGGTC  >  NZ_CP009273/1412238‑1412327

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑