Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1799011	1799042	32	2 [1]	[1] 7	espL1	type III secretion system effector EspL1

TCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGC  >  NZ_CP009273/1799041‑1799132   |                                                                                          tCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCa    >  2:263314/1‑90 (MQ=255)   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGt                                             <  1:106358/47‑1 (MQ=255)   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGt                                             >  2:106358/1‑47 (MQ=255)   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGaca            <  1:259574/80‑1 (MQ=255)   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGaca            >  2:259574/1‑80 (MQ=255)   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGc  >  1:157661/1‑90 (MQ=255)   gACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGc  >  2:132238/1‑90 (MQ=255)   |                                                                                          TCGACGCTGGGTGCTTTTGCAAAAAAACATTCTTTTAGTCAACATCAGTTATTTACACTATTGGCCGCTAAAAATCATGACAACATGTCAGC  >  NZ_CP009273/1799041‑1799132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑