Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	578866	578874	9	2 [1]	[0] 2	BW25113_RS26085/appY	tail fiber assembly protein/DNA‑binding transcriptional activator AppY

TAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGC  >  NZ_CP009273/578875‑578923 |                                                 taGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGc  >  1:178720/1‑49 (MQ=255) taGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGc  <  2:178720/49‑1 (MQ=255) |                                                 TAGCAAGAGGTTTCAGGTGCGTTGTAGTGAGTTTATGTTAATAAAAAGC  >  NZ_CP009273/578875‑578923

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑