| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3920778 = | 24 (0.880) | 3 (0.130) | 3/144 | 2.0 | 12.3% | coding (264/993 nt) | asnA | aspartate‑‑ammonia ligase |
| ? | NZ_CP009273 | 3920817 = | 22 (0.940) | coding (303/993 nt) | asnA | aspartate‑‑ammonia ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTGAGCGTCAATTCTC > NZ_CP009273/3920732‑3920906 | tGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATg < 1:40005/90‑1 (MQ=255) cGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg < 1:561941/90‑1 (MQ=255) cGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAg > 1:409492/1‑90 (MQ=255) ggAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTc > 2:661524/1‑90 (MQ=255) accgagtgcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTtc < 1:284454‑M2/18‑1 (MQ=255) gTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTtct‑c < 1:661524/90‑1 (MQ=255) tCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑cc > 2:90199/1‑90 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACt < 1:153593/90‑1 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACt > 1:51789/1‑90 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACt < 1:512642/90‑1 (MQ=255) gaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGt < 1:284454‑M1/72‑1 (MQ=255) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTc < 2:359623/90‑1 (MQ=255) cAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTc < 2:324102/90‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTa > 2:127878/1‑90 (MQ=255) cTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGa < 2:107093/90‑1 (MQ=255) cgcgggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTg < 2:165421‑M2/48‑1 (MQ=255) cgcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTg < 1:431471/90‑1 (MQ=255) GCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTc < 1:584807‑M1/71‑1 (MQ=255) GCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTc < 1:295658‑M1/71‑1 (MQ=255) GCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTc > 2:295658‑M1/1‑71 (MQ=255) GCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTc > 2:584807‑M1/1‑71 (MQ=255) agggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa < 1:345498‑M2/57‑1 (MQ=255) AGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 1:310903‑M1/1‑90 (MQ=255) AGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 2:255561‑M1/1‑90 (MQ=255) TGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg < 2:756382‑M1/90‑1 (MQ=255) TGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg < 2:719421‑M1/90‑1 (MQ=255) TGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAAcgcg < 2:53360‑M1/90‑1 (MQ=255) gTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGt > 2:664995/1‑90 (MQ=255) acacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTaa < 2:41042/90‑1 (MQ=255) cGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATgg > 1:685460/1‑90 (MQ=255) gCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTC‑GTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGc > 2:409766/1‑90 (MQ=255) cacaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGc > 2:536095/1‑90 (MQ=255) acaTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCg < 1:756382/90‑1 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGAc > 2:622220/1‑90 (MQ=255) tGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACg < 1:127878/90‑1 (MQ=255) gcccttcgcccCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTGAg < 2:623139‑M2/79‑1 (MQ=255) ttcgcccCGATGAAGACCGTCTTTCTCCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTg < 2:636766‑M2/78‑1 (MQ=255) ttcgcccCGATGAAGACCGTCTTTCTCCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTg > 1:636766‑M2/8‑85 (MQ=255) tcgcccCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTGAGCGTCa > 1:200396‑M2/7‑90 (MQ=255) cGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTGAGCGTCAATtctc < 1:31386/90‑1 (MQ=255) | TGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCT‑CCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTGAGCGTCAATTCTC > NZ_CP009273/3920732‑3920906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |