| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 4532499 = | 4 (0.150) | 19 (0.780) | 16/150 | 0.3 | 66.0% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | 4532813 = | 16 (0.650) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
TAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGA > NZ_CP009273/4532726‑4532900 | taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATg > 1:700270/1‑90 (MQ=255) tagatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGttt > 1:527262‑M2/85‑90 (MQ=255) agatgctttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTc < 2:4033‑M2/7‑1 (MQ=255) ttttgtcgttttttaatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCtttt < 2:195960‑M2/14‑1 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 2:652891/1‑90 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa > 1:215537/1‑90 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAc > 1:355462/1‑90 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGGCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg < 2:407229/90‑1 (MQ=255) aatatttttatgcttgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACtgtg < 2:4784‑M2/28‑1 (MQ=255) aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc > 2:636039/1‑90 (MQ=255) gAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 2:44444/1‑90 (MQ=255) gAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 2:244784/1‑90 (MQ=255) ttgagaaaaaatacgtaacttatttatgatatggagagtttggccccaaATGTTTCATCTTTTGGGGGGAAACTGTGCAGTGTTGGCAGt > 1:67937‑M2/50‑90 (MQ=255) tgagaaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTc > 1:351487‑M2/49‑90 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa < 1:652891/90‑1 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc < 1:654222/90‑1 (MQ=255) aaaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc < 2:327663‑M2/46‑1 (MQ=255) aaaaatacgtaacttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACt > 1:771498‑M2/44‑90 (MQ=255) ttGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg < 2:620315/90‑1 (MQ=255) gTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt > 1:255016/1‑90 (MQ=255) ccGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 1:657107/90‑1 (MQ=255) aTGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 2:350169/90‑1 (MQ=255) ttatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaaca < 2:771498‑M2/60‑1 (MQ=255) tatttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaacaa > 2:525565‑M2/30‑90 (MQ=255) ttCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg < 2:215537/90‑1 (MQ=255) tttatgatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg < 2:15058‑M2/63‑1 (MQ=255) gatatggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTAc > 1:564706‑M2/23‑90 (MQ=255) tG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa < 1:44444/90‑1 (MQ=255) atggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa > 1:172930‑M2/20‑90 (MQ=255) atggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa > 2:463403‑M2/20‑90 (MQ=255) ggacagtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGGGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAAc > 2:232868‑M2/18‑90 (MQ=255) gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTg > 1:175364‑M2/13‑90 (MQ=255) gtttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTg > 1:206485‑M2/13‑90 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc > 2:238767‑M2/11‑90 (MQ=255) ttggccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGcc > 1:416423‑M2/11‑90 (MQ=255) gccccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCAt > 1:599850‑M2/8‑90 (MQ=255) ccaaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTc > 2:230973‑M2/5‑90 (MQ=255) aaATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTcgt > 2:77694‑M2/3‑89 (MQ=255) | TAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGACTGCCCATGTCGA > NZ_CP009273/4532726‑4532900 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |