| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 4532507 | 4 (0.150) | 18 (0.740) | 14/150 | 0.4 | 64.8% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA |
| ? | NZ_CP009273 | = 4532803 | 16 (0.650) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria switch DNA invertase FimE/type 1 fimbrial major subunit FimA | |||||
CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAC > NZ_CP009273/4532719‑4532888 | cTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggcc > 1:183261‑M2/1‑85 (MQ=255)cTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggcc < 1:173338‑M2/90‑6 (MQ=255) ataaataaAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATTCTTTCCTCTATG‑AGTCAAAAtggcccc < 1:724871‑M2/90‑8 (MQ=255) aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaat > 2:700993‑M2/1‑80 (MQ=255) aataaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaat > 2:556395‑M2/1‑80 (MQ=255) taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattg < 1:39768‑M2/90‑13 (MQ=255) taaaGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATg > 1:700270/1‑90 (MQ=255) aGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtct > 2:220840‑M2/1‑75 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATGAAGTCAAAATGGCCCCAAATGTTTCATCTTTTgg > 2:652891/1‑90 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttattt < 1:21489‑M2/90‑27 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggcc > 2:236507‑M2/1‑64 (MQ=255) gAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggcc < 1:236507‑M2/69‑6 (MQ=255) atatTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttatttgt < 2:547962‑M2/90‑29 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccagt < 2:432117‑M2/69‑11 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccagt > 1:432117‑M2/1‑59 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGaaa > 1:215537/1‑90 (MQ=255) ttAAGCCAACAAATAAACTGAAAAAGTTTGTCCGAGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttatttgtttt < 1:184525‑M2/90‑32 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttatttgtttttt < 2:759024‑M2/90‑34 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttatttgtttttt < 1:414014‑M2/90‑34 (MQ=255) aaGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAAc > 1:355462/1‑90 (MQ=255) ccAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttatttgtttttttaa < 1:754850‑M2/90‑37 (MQ=255) caacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGGCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACtgtg < 2:407229/90‑1 (MQ=255) aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttatttgtttttttaact < 1:388312‑M2/90‑39 (MQ=255) aacaaATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGc > 2:636039/1‑90 (MQ=255) tGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaat > 1:759024‑M2/1‑41 (MQ=255) gAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 2:244784/1‑90 (MQ=255) gAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGt > 2:44444/1‑90 (MQ=255) aaGTTTGTCCGCGATGCTTTCCTCTATGAAGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCaa < 1:652891/90‑1 (MQ=255) aGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAAc < 1:654222/90‑1 (MQ=255) ttGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCg < 2:620315/90‑1 (MQ=255) gTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGtt > 1:255016/1‑90 (MQ=255) ccGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTa < 1:657107/90‑1 (MQ=255) aTGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTacaaaa < 2:350169/90‑1 (MQ=255) ttCCTCTATG‑AGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctcttctct < 2:348985‑M2/90‑73 (MQ=255) ttCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAg < 2:215537/90‑1 (MQ=255) aTG‑AGTCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctcttctctttttaat < 2:668435‑M2/90‑80 (MQ=255) tG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGa < 1:44444/90‑1 (MQ=255) tCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctcttctctttttaatttttc < 1:213111‑M2/90‑85 (MQ=255) tCAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctcttctctttttaatttttc < 1:442032‑M2/90‑85 (MQ=255) cAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctcttctctttttaatttttcg < 1:676817‑M2/90‑86 (MQ=255) cAAAAtggccccaattgtcttgtatttatttgtttttttaactttattatcaataagttaaatcaaacctcttctctttttaatttttcg < 1:26136‑M2/90‑86 (MQ=255) | CTATAAATAAAGATAACAATAGAATATTAAGCCAACAAATAAACTGAAAAAGTTTGTCCGCGATGCTTTCCTCTATG‑AGTCAAAATGGCCCCAAATGTTTCATCTTTTGGGGGAAAACTGTGCAGTGTTGGCAGTCAAACTCGTTTACAAAACAAAGTGTACAGAACGAC > NZ_CP009273/4532719‑4532888 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |