| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,118,857 | 0 | T | G | 60.0% | 2.7 / 11.8 | 15 | intergenic (‑128/+6) | yceB/grxB | lipoprotein/glutaredoxin 2 |
| Reads supporting (aligned to +/- strand): ref base T (1/5); new base G (9/0); total (10/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.00e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGCCATATTATCGCGGTAATCAGCAACGCGGCT > NZ_CP009273/1118771‑1118937 | aCGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGTCAg > 1:532317/1‑90 (MQ=255)aCGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGGCAg > 1:299925/1‑90 (MQ=255)aCGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGGCAg > 1:308783/1‑90 (MQ=255)aCGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGGCAg > 1:335930/1‑90 (MQ=255)aCGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGGCAg > 1:584880/1‑90 (MQ=255) cGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGGCAgg > 2:312697/1‑90 (MQ=255) cGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCCCGGGCGGGGCAg > 2:282295/1‑90 (MQ=255) gcaTGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGGCAGGGTTa > 2:685511/1‑90 (MQ=255) cACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGGCAGGATTAAAACGCCa > 2:627558/1‑90 (MQ=255) ccAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGGGAGGATTAAAACGcccat > 2:425836/1‑87 (MQ=255) tAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGTCAGGATTAAATCGCCATTGATGATa < 2:494612/90‑1 (MQ=255) aaaCTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGTTCAGGATTAAATCGCCATTGATGATaa < 2:87234/90‑1 (MQ=255) gAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTc < 1:12824/90‑1 (MQ=255) aaaCGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGc < 2:689504/90‑1 (MQ=255) cgc‑gGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGCCATATTATCGCGGTAATCAGCAACGCGGCt < 2:335930/90‑1 (MQ=255) | ACGCAGCATGTGTCACCAGCGATAAACTCGCCAGCAGAAAAAACTGAAAACGGCGGCAACCCGCGAATACAGGCTGCCGC‑GGCGGGTCAGGATTAAATCGCCATTGATGATAACAAATTGATTTGTGTCTGTTTCGCCATATTATCGCGGTAATCAGCAACGCGGCT > NZ_CP009273/1118771‑1118937 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |