| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,032,398 | 0 | A | C | 62.5% | 8.9 / 19.4 | 24 | G235G (GGT→GGG) | xerD | site‑specific tyrosine recombinase XerD |
| Reads supporting (aligned to +/- strand): ref base A (6/3); new base C (0/15); total (6/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.24e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.11e-03 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACGCGTAAATCCGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCATCTGCTGCGCACGCTGGCTGGGAAACAACACGT > NZ_CP009273/3032315‑3032483 | ccgcgTAAACCCGCACCATGATTTAATAAAGGAGGGGAAAAAGCGTGACGCAACACATGGGGTGACAGCTTTTCGCTGTCGATCCCCGcc < 2:678055/89‑1 (MQ=255)acGCGTAAATCCGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGcc > 2:265927/1‑90 (MQ=255) cgTAAATCCGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACAGGGGGTGACAGCTTTTCGCTGTCGATACCCGCcagc < 2:721511/90‑1 (MQ=255) gTAAATCGGCCCTATGATTTAATAAATGGGTGGAAAAAGCGTGACGAAACAAGGGCGGAAAGAGCTTTTCGGTGTCGATCCCCGCcagca < 2:545817/90‑1 (MQ=255) aaaaCCCGCACCATGATTTAATAAATGGGGGGAAAAGGCGTGACCCAACACATGGGGTGAAAGCTTTTCGCTGTCGATCCCCGCcagcac < 2:351938/89‑1 (MQ=255) ccccACCTTAATTAAATAACAGGGTGCAAAACGCTTGACCAACCACAGGCGGTGACACTTTTCCGCTGCCGATCCCCGCCAGCACAGCAt < 2:121123/87‑1 (MQ=255) cGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATa > 1:545817/1‑90 (MQ=255) gCACCATGATTTAATAAATGAGTGGAAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATCCCCGCCAGCACAGCATaa < 1:38114/90‑1 (MQ=255) gCACCATGATTTAATAAATGAGGGGCAAAAGCGTGACGCACCACATGCGGTGACATTTTTTCGCTGTCGATCCCCGCCAGCACAGCATaa < 1:265927/90‑1 (MQ=255) ccacaATGATTAAATAAATGAGTGGAAAAAGCCGGACGCAACACATGCGGTGACAGCTTTCCGCTGCCGATCCCCGCCAGCACAGCATaa < 2:628886/89‑1 (MQ=255) ccACCATGTTTAAATAAATGGGTGAAAAAAGCGGGCCGCAACACATGGGGTGACAGCTTTTCGCTGTCGATCCCCGCCAGCACAGCATaa < 2:401655/89‑1 (MQ=255) ccACCATGATTTAATAAATGAGTGGAAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATaa < 1:390361/89‑1 (MQ=255) ccACCATAATTAAATAAAGGAGTGGAAAAAGCGTGACCCAACAAATGCGGTGAAAGCTTTCCGTTGTCGATCCCCGCCAGCACAGCATaa < 2:372369/89‑1 (MQ=255) ccACCATAATTAAAAAAATGAGTGACAAAAGCGTGCCCCAACACATGCGGTGACAGTTTTCCGCTGTCGATCCCCGCCAGCACAGCATaa < 1:199328/89‑1 (MQ=255) aTGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGttt > 1:164069/1‑90 (MQ=255) aTGATTTAATAAATGAGTGGAAAAAGCGTGACCCAAAACATGTGGTGACAGTTTTTCGCTGTCTATCCCCGCCAGCACAGCATAATGttt < 2:358924/90‑1 (MQ=255) ttAAAAAATGAGTGGCAAAAGCGCGACGCAACACATGCGGTAACAGCTTTTCGTTGTCGATCCCCGCCAGCACAGCATAATGTTTAATAc < 2:130566/90‑1 (MQ=255) taaaaaAGGGGTGGCAAAAGGGTTACCCAACCCATGGGGTGCCAGTTTTTCGCTTTCAATCCCCGCCAGCACAGCATAATGTTTAATACg < 1:603940/90‑1 (MQ=255) aataaATGGGTGGAAAAGGCGTGACAAAACACCGGCGGTGACAGTTTTTCGCGGTCGATCCCCGCCAGCACAGCATAATGTTTAATACgg < 2:567911/90‑1 (MQ=255) ataaATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGt > 1:130566/1‑90 (MQ=255) gTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAg > 1:289367/1‑90 (MQ=255) ggTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATaa < 1:618103/42‑1 (MQ=255) ggTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATaa > 2:618103/1‑42 (MQ=255) cGATCCCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCATCTGCTGCGCACGCTGGCTGGGAAACAACACGt < 1:734769/90‑1 (MQ=255) | ACGCGTAAATCCGCACCATGATTTAATAAATGAGTGGCAAAAGCGTGACGCAACACATGCGGTGACAGCTTTTCGCTGTCGATACCCGCCAGCACAGCATAATGTTTAATACGGTGCCAGAAGGTCTGTCGCGTCATCTGCTGCGCACGCTGGCTGGGAAACAACACGT > NZ_CP009273/3032315‑3032483 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |