New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1972751	1 (0.060)	15 (0.930)	12/168	0.3	93.8%	intergenic (‑297/‑483)	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC
	?	NZ_CP009273	= 2283592	NA (NA)					intergenic (‑68/‑387)	BW25113_RS11435/narP	IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP

GTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972668‑1972840                                                                                    |                                                                                          gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATaaa                                                                                     <  2:147331‑M2/11‑1 (MQ=255)             gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCAt                                                                         <  2:435536‑M2/23‑1 (MQ=255)             gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCAt                                                                         <  1:402120‑M2/23‑1 (MQ=255)               aTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccc                                                                       <  2:119426‑M1/90‑21 (MQ=255)                 aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACtt                                                                     <  1:32022‑M2/27‑1 (MQ=255)                 aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctg                                                                     >  2:417371‑M1/1‑68 (MQ=255)                  aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACttt                                                                    <  2:30814‑M2/28‑1 (MQ=255)                      ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgata                                                                  >  2:452805‑M1/1‑63 (MQ=255)                      ggAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgata                                                                  <  1:452805‑M1/88‑26 (MQ=255)                        aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgata                                                                  <  1:297574‑M1/86‑26 (MQ=255)                        aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgata                                                                  >  2:297574‑M1/1‑61 (MQ=255)                         ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgaga                                                             >  1:254646‑M1/1‑60 (MQ=255)                          gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagat                                                            <  1:376669‑M1/90‑32 (MQ=255)                            aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACttt                                                                    >  1:179059‑M2/53‑80 (MQ=255)                            aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACttt                                                                    <  2:179059‑M2/28‑1 (MQ=255)                                          gtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGta                                                                                 >  2:224123‑M2/39‑53 (MQ=255)                                          gtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGta                                                                                 <  1:224123‑M2/15‑1 (MQ=255)                                                    aagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                  <  1:421739‑M2/62‑1 (MQ=255)                                                      tGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca                                <  1:417371‑M1/90‑60 (MQ=255)                                                                    aaCACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgag                  >  1:333851‑M1/1‑17 (MQ=255)                                                                         tCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           >  2:68418‑M1/1‑12 (MQ=255)                                                                         tCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                           <  1:68418‑M1/60‑49 (MQ=255)                                                                           ccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCaaaaa           >  2:307360‑M2/6‑90 (MQ=255)                                                                           aaTTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaa           >  2:213482‑M1/1‑10 (MQ=255)                                                                                 ttAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAAc     >  2:9088/1‑90 (MQ=255)                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  >  1:97424‑M1/1‑1 (MQ=255)                                                                                    aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc  >  1:237632‑M1/1‑1 (MQ=255)                                                                                    |                                                                                          GTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACAGG  >  NZ_CP009273/1972668‑1972840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.