| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,210,188 | C→T | L248L (CTG→CTA) | bluF ← | blue light‑responsive regulator BluF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,210,188 | 0 | C | T | 100.0% | 61.4 / NA | 17 | L248L (CTG→CTA) | bluF | blue light‑responsive regulator BluF |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (6/11); total (6/11) | |||||||||||
AAATTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACCAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCGAGCTCAAGTGCGTGTGCCATCGTGAATGCAAGCGCCTT > NZ_CP009273/1210104‑1210268 | aaaTTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGt < 1:239220/90‑1 (MQ=255) aaTTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTc < 2:152225/90‑1 (MQ=255) tCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATa < 2:143237/90‑1 (MQ=255) tCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATa < 1:374180/90‑1 (MQ=255) aCCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATc < 1:226393/90‑1 (MQ=255) ggCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCAcc > 1:406829/1‑90 (MQ=255) gCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCg < 1:273535/90‑1 (MQ=255) gCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCg < 2:381552/90‑1 (MQ=255) ttATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAgattgat > 1:333018/1‑67 (MQ=255) ttATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAgattgat < 2:333018/67‑1 (MQ=255) tCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAg < 2:390075/41‑1 (MQ=255) aaGTAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCGAGCTCAAGTGCgtg > 1:360224/1‑90 (MQ=255) tAAAAAAGAGACTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCGAGCTCAAGTGCGTGTGc > 2:166055/1‑90 (MQ=255) gaCTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCGAGc > 1:215197/1‑67 (MQ=255) gaCTGCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCGAGc < 2:215197/67‑1 (MQ=255) gCGTCAGGTTCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCGAGCTCAAGTGCGTGTGCCATCGTGAATGCa > 1:412565/1‑90 (MQ=255) ttCGTTAACTAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCGAGCTCAAGTGCGTGTGCCATCGTGAATGCAAGCGCCtt < 1:246809/90‑1 (MQ=255) | AAATTCAACGATGATTTGTTCAGGCACCAGAGCATTGGCCTTTATTTCATTAAGTAAAAAAGAGACTGCGTCAGGTTCGTTAACCAGGGTCATAGGTAATAGATTGATTGAAATCATTTTATCACCGAGCTCAAGTGCGTGTGCCATCGTGAATGCAAGCGCCTT > NZ_CP009273/1210104‑1210268 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |