| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,267,830 | G→C | G145A (GGC→GCC) | soxR → | redox‑sensitive transcriptional activator SoxR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,267,830 | 0 | G | C | 100.0% | 42.4 / NA | 14 | G145A (GGC→GCC) | soxR | redox‑sensitive transcriptional activator SoxR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (5/9); total (5/9) | |||||||||||
ACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATC > NZ_CP009273/4267746‑4267914 | aCGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCAc < 1:15240/90‑1 (MQ=255) ttGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGa > 2:5385/1‑90 (MQ=255) tgGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGATGa > 2:6861/1‑90 (MQ=255) gCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGATGAAc < 2:215736/90‑1 (MQ=255) cgcAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAgc < 1:406445/90‑1 (MQ=255) cgcAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAgc < 2:146129/90‑1 (MQ=255) ttGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAg < 1:417188/90‑1 (MQ=255) cGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGgcgc < 2:166477/90‑1 (MQ=255) gTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGGTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCt > 1:459306/1‑90 (MQ=255) ggCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTc > 2:61327/1‑90 (MQ=255) gCGACCGCTTAGGAGAAGAAGGTACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTcc < 2:61133/90‑1 (MQ=255) gagaAGAAGGTACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGgtctttgtctt < 2:277614/90‑1 (MQ=255) gTACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTAt > 1:392697/1‑90 (MQ=255) tACCGCCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATc < 1:471467/90‑1 (MQ=255) | ACGGATGTATTGGTTGTGGCTGCCTTTCGCGCAGTGATTGCCCGTTGCGTAACCCGGGCGACCGCTTAGGAGAAGAAGGTACCGGCGCACGCTTGCTGGAAGATGAACAAAACTAAAGCGCCACAAGGGCGCTTTAGTTTGTTTTCCGGTCTTTGTCTTTCTCTCTATC > NZ_CP009273/4267746‑4267914 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |