| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,902,968 | Δ1 bp | coding (56/144 nt) | mgrB ← | PhoP/PhoQ regulator MgrB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,902,966 | 0 | A | . | 100.0% | 59.4 / NA | 15 | coding (58/144 nt) | mgrB | PhoP/PhoQ regulator MgrB |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (7/8); total (7/8) | |||||||||||
ACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATG > NZ_CP009273/1902885‑1903050 | acGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCC‑AAGCagcaa < 1:53944/90‑1 (MQ=255)acGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCC‑AAGCagcaa < 2:391115/90‑1 (MQ=255) gggATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCC‑AAGCagcaagc < 1:10233/90‑1 (MQ=255) gTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCC‑AAGCAGCAAGCAAGCCAAcacc > 1:19657/1‑90 (MQ=255) gCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACaa > 2:109025/1‑90 (MQ=255) tCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACg < 1:363753/90‑1 (MQ=255) aaaaTTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCg < 1:177798/90‑1 (MQ=255) aCATCCTGATCGCACATCATGATGAATACCTGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACtttt > 2:344858/1‑90 (MQ=255) acaTCATGTTGAATACCTGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAAtctc > 2:8949/1‑90 (MQ=255) catGTTGAATACCTGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGtt < 1:344858/90‑1 (MQ=255) ccTGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCtt > 2:308587/1‑90 (MQ=255) tGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTAt > 2:39393/1‑90 (MQ=255) tGCGCCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTAt > 2:96142/1‑90 (MQ=255) tcgcCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATg < 1:152158/89‑1 (MQ=255) gcgcCC‑AAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATg < 1:102916/90‑1 (MQ=255) | ACGGGATAAACTGGTTAATGGCACAAATTCCGCTGAAAAATTGTACATCCTGATCGCACATCATGTTGAATACCTGCGCCCAAAGCAGCAAGCAAGCCAACACCACGACAACCAGAACGACCCATCGAAACTTTTTCACTCCAATCTCCGTTTCACCTACCTTATG > NZ_CP009273/1902885‑1903050 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |