| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 360104 = | NA (NA) | 23 (1.390) | 13/166 | 0.3 | NA | intergenic (‑35/+251) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein |
| ? | NZ_CP009273 | = 360286 | NA (NA) | intergenic (‑217/+69) | lacZ/BW25113_RS23320 | beta‑galactosidase/relaxase/mobilization nuclease domain‑containing protein | |||||
TGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360022‑360193 | tGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTg > 2:431910/1‑90 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 1:202012/90‑1 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 1:265850/90‑1 (MQ=255) gCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTgg < 2:370255/90‑1 (MQ=255) tACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATgg > 1:48381/1‑90 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCGccccccccccc > 2:210962/1‑89 (MQ=255) gCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTcc < 2:260683/90‑1 (MQ=255) ggAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCGCccccccccccccccc > 2:183004/1‑87 (MQ=255) cTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGt < 2:363815/90‑1 (MQ=255) aaGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCCCCCCCCCCCCCCCCGGCCGGTGCTTTGcca > 1:285046/1‑88 (MQ=25) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGGGGCCCGCCCCCCCCCCCCCCCGCCCCTGCTTCTCAA‑AGTTTAAATcccc > 2:129603/1‑88 (MQ=16) tGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGc < 1:175384/90‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGGGGGCCGCCCCCCCCCCCCCCGGGCCG‑TGCTTCCCCA‑CGGTCAAAAcccccc > 2:3661/1‑86 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGGCCCGCCCCCCCCCCCCCCCGCCCGTGGTTTGCAACCGTTCAAAcccccc > 2:368076/1‑87 (MQ=12) tCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCcggc < 2:34126/90‑1 (MQ=255) ccAATTCCTGCCAGTTTATGGC‑GGGCGTCCTCCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGt < 2:231873/90‑1 (MQ=255) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:289283/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:56276/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:257069/90‑1 (MQ=35) aaTTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTcc < 2:476483/90‑1 (MQ=35) | TGCCAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGC‑GGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAA‑CGTTCAAATCCGCTCCCGGCGGATTTGTCC > NZ_CP009273/360022‑360193 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |