Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	2776935	2776949	15	3 [1]	[1] 3	BW25113_RS24210/BW25113_RS25705	recombinase family protein/DUF5507 domain‑containing protein

TTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTC  >  NZ_CP009273/2776948‑2777039   |                                                                                          ttGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAg    >  2:2090/1‑90 (MQ=255)   gTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTc  <  1:2090/90‑1 (MQ=255)   gTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTc  <  1:256982/90‑1 (MQ=255)   |                                                                                          TTGTTTCAATCTACGTTATTATCTCTTTGTAAAAATTGCCATTTATTAATCATTGAAAACTGCTTTTAGAACTTGATACAACGGGACTAGTC  >  NZ_CP009273/2776948‑2777039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑