Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3798414	3798447	34	2 [0]	[0] 2	rfaS	LPS core biosynthesis protein RfaS

GCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGC  >  NZ_CP009273/3798448‑3798537 |                                                                                          gCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGc  >  1:231440/1‑90 (MQ=255) gCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGc  >  1:324339/1‑90 (MQ=255) |                                                                                          GCAACCCAATTTATAAAATAAATAGTCATAATAAAGTTAGTTCCAGTACATACTAATAAATATTTTTATAATCCTTTGCGTTGTGTTCGC  >  NZ_CP009273/3798448‑3798537

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑