| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,679,412 | 0 | T | C | 54.5% | 8.0 / 18.6 | 22 | E1041G (GAG→GGG) | bcsC | cellulose synthase complex outer membrane protein BcsC |
| Reads supporting (aligned to +/- strand): ref base T (5/5); new base C (0/12); total (5/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.57e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.97e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGA > NZ_CP009273/3679324‑3679495 | catcaGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTc > 1:307445/1‑90 (MQ=255) cGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCCCCCAGCCCCCACGCCCATTTTTCCGTGCGCTCCCGCca < 1:140430/90‑1 (MQ=255) cgcgGCTTGTTTTTGGTGGGTGAAGGCGCCCCCGAGCCAGCCGCCCCCAGCCCCCACGACCATTTTCCCGTGCGCCCCCGCCACATCAcc < 2:179611/90‑1 (MQ=255) gcttGGTTTTGGTGCGTGAAGGCCCCCCCGACCCAGCCGCCCCCACCCCCCCCGCCCATTTTTCCGTCCCCCCCCGCCACATCACCGGTa < 2:429173/87‑1 (MQ=255) ttttGGGGCGTAACTGCGCCCCCGGCCCAGCCCCCCCCACCCCCCACGACCAGTTTCCCGGGCGCTCCCGCCACATCACCGGTATGGCaa < 2:322812/90‑1 (MQ=255) tttgGGTGCGTAAATGCCCCCCCGCCCCAGCCCCCCCCCCCCCCCACCACCTTTTTCCCGTGCCCCCCCGCCACATCACCGGTATGGCaa < 2:424841/90‑1 (MQ=255) ggTGCGTAAAGGCCCCCCCGACCCAGCCCCCCCCCCCCCCCACGCCCATTTTCCCGGCCCCCCCCGCCACATCACCGGTATGGCAAACGa < 2:28384/90‑1 (MQ=255) tgggTGAATGCGCCCACGACCCAGCCGCCCCCAGCCCCCACGCCCTTTTTCCGGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACa < 1:356185/87‑1 (MQ=255) tGCGTGAATGCGCCCACGAGCCAGCCGCCCCCACCCCCCACGCCCATTTTTCCGTGCGCCCCCGCCACATCACCGGTATGGCAAACGACa < 2:202654/90‑1 (MQ=255) tGCGTGAATGCGCCCACGAGCCAGACGCCCCCACCCCCCACGCCCATTTTTCCGTGCCCTCCCGCCACATCACCGGTATGGCAAACGACa < 1:52350/90‑1 (MQ=255) gTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGt > 1:97379/1‑90 (MQ=255) gTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGt > 1:335930/1‑90 (MQ=255) ccACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCgg > 1:440127/1‑90 (MQ=255) ccACGACCCAGCCCCCCCCCGCCCCCCCGCCCTTTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCgg < 2:278796/90‑1 (MQ=255) ccGACCCAGCCCCCCCCCGCCCCCCCCACCATTTTCCCGGCCGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGAc < 2:307445/89‑1 (MQ=255) ccGCCCCCAGCCCCCACCCCCTTTTTTCCGCGCGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAc < 2:243576/89‑1 (MQ=255) ccGCCCCCACCCCCCCCGACCATTTTTCCGTGCGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAAc < 2:149561/89‑1 (MQ=255) cccccACGACCTGTTTCCCGTGCGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGAcc < 1:180293/88‑1 (MQ=255) cACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCgagt > 2:221924/1‑90 (MQ=255) tttttcCCGTGCCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGc < 2:97379/88‑1 (MQ=255) gttttcCCGCGCCCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGc < 2:335930/88‑1 (MQ=255) gTGCGCCCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGa < 1:221924/90‑1 (MQ=255) | CATCAGCGGATAACGCGGCATGGTTTTGGTGCGTGAATGCGACCACGAGCCAGACGCACCCAGCTCCCACGACCAGTTTTCCGTGCGCTCCCGCCACATCACCGGTATGGCAAACGACAGGTATTCCTGCGGACTGTAGTAACCGCCCTGACCGAGTGAGTAGCCACTCAGA > NZ_CP009273/3679324‑3679495 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |