New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1972751	0 (0.000)	21 (1.060)	12/164	0.4	100%	intergenic (‑297/‑483)	flhD/uspC	flagellar transcriptional regulator FlhD/universal stress protein UspC
	?	NZ_CP009273	= 2283592	NA (NA)					intergenic (‑68/‑387)	BW25113_RS11435/narP	IS5‑like element IS5 family transposase/nitrate/nitrite response regulator protein NarP

TCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACA  >  NZ_CP009273/1972666‑1972838                                                                                      |                                                                                        gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATa                                                                                     <  1:100435‑M2/9‑1 (MQ=255) gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATa                                                                                     <  2:563750‑M2/9‑1 (MQ=255)   gagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATaaa                                                                                   <  1:397646‑M2/11‑1 (MQ=255)       cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcg                                                                               >  1:107718‑M1/1‑80 (MQ=255)            cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAGAACACTCAATTACTTAAggaaggtgcgaacaa                                                                          >  1:516925‑M1/1‑75 (MQ=255)              cacaTACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagt                                                                        <  2:119249‑M1/90‑18 (MQ=255)                        ggAGGGGGGCTGCGATTTTCAATAATACGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatg                                                              >  2:90671‑M1/1‑63 (MQ=255)                          aagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACttttgtttt                                                            <  1:546703‑M2/34‑1 (MQ=255)                          aGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgag                                                            >  2:469889‑M1/1‑61 (MQ=255)                              gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatca                                                        >  2:382696‑M1/1‑57 (MQ=255)                               atgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGgtg                                                       <  2:156090‑M2/39‑1 (MQ=255)                                             ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                         <  2:107718‑M1/90‑49 (MQ=255)                                                gccgagaagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaa                                      >  2:477200‑M2/35‑90 (MQ=255)                                                  gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccct                                                                    >  1:501358‑M1/1‑37 (MQ=255)                                                  gCGTGATGCAGATCACACAAAACACTCAATTACTTAAggaaggtgcgaacaagtccct                                                                    <  2:501358‑M1/58‑22 (MQ=255)                                                      aagaatttccccgcttattcgcaccttcCTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt                                <  2:330552‑M2/62‑1 (MQ=255)                                                                 cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                         <  2:248919‑M1/70‑49 (MQ=255)                                                                 cacaAAACACTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga                                         >  1:248919‑M1/1‑22 (MQ=255)                                                                        cacTCAATTACTTAAggaaggtgcgaacaagtccct                                                                    <  2:600244‑M1/36‑22 (MQ=255)                                                                        cacTCAATTACTTAAggaaggtgcgaacaagtccct                                                                    >  1:600244‑M1/1‑15 (MQ=255)                                                                          cTCAATTACTTAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat            >  2:109755‑M1/1‑13 (MQ=255)                                                                                    tAAggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct  <  2:438117‑M1/90‑88 (MQ=255)                                                                                     aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                       <  2:199909‑M1/52‑51 (MQ=255)                                                                                     aaggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                       >  1:199909‑M1/1‑2 (MQ=255)                                                                                      aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                       >  1:133189‑M1/1‑1 (MQ=255)                                                                                      aggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagc                                       <  2:133189‑M1/51‑51 (MQ=255)                                                                                      aggaaggtgcgaacaagtccctgatatgagatcat                                                       >  2:275915‑M1/1‑1 (MQ=255)                                                                                      aggaaggtgcgaacaagtccctgatatgagatcat                                                       <  1:275915‑M1/35‑35 (MQ=255)                                                                                      |                                                                                        TCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAGCAAAAATGAAACA  >  NZ_CP009273/1972666‑1972838

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.