New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 1203261	0 (0.000)	7 (0.440)	6/132	0.7	93.3%	coding (305/630 nt)	BW25113_RS05990	hypothetical protein
	?	NZ_CP009273	= 1205058	1 (0.060)					coding (57/540 nt)	BW25113_RS06005	phage tail protein

GAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA  >  NZ_CP009273/1204972‑1205138                                                                                       |                                                                                 gAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGcct                                                                               >  2:210608‑M2/1‑87 (MQ=255)                       tCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcga                                                         <  1:7049‑M2/90‑26 (MQ=255)                                                       cACGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgata                         <  2:295436‑M2/90‑58 (MQ=255)                                                        aCGGAACCGGGACACCAACAGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatat                        <  1:166203‑M2/90‑59 (MQ=255)                                                                gggACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt                >  2:597329/1‑90 (MQ=255)                                                                           aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc                                   <  1:166976‑M2/60‑48 (MQ=255)                                                                           aGGTAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatc                                   >  2:166976‑M2/1‑13 (MQ=255)                                                                           aGGTAATGCAGAGccttctcccaaaccaagggtttcgagacccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcg     <  1:476644‑M2/90‑78 (MQ=255)                                                                              tAATGCAGAGccttctcccaaaccaaggttttcgagagccgtttgcacagtgccatccgatttgatatcgccaaacggattcttgcggct  <  1:528731‑M2/90‑81 (MQ=255)                                                                                       |                                                                                 GAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTA  >  NZ_CP009273/1204972‑1205138

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.