Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1338988	1338990	3	2 [0]	[0] 2	ymiD	protein YmiD

AACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATAT  >  NZ_CP009273/1338942‑1338987                                              | aaCGGCTAATTATCATCCAGGAATACGATATATAATGACGGGatat  >  1:111403/1‑46 (MQ=255) aaCGGCTAATTATCATCCAGGAATACGATATATAATGACGGGatat  <  2:111403/46‑1 (MQ=255)                                              | AACGGCTAATTATCATCCAGGAATACGATATATAATGACGGGATAT  >  NZ_CP009273/1338942‑1338987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑