Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NZ_CP009273 2999279 2999304 26 2 [1] [1] 2 ygeV/ygeW sigma‑54‑dependent Fis family transcriptional regulator/knotted carbamoyltransferase YgeW

GTTGATGGTTCACAGATCATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACA  >  NZ_CP009273/2999189‑2999294
                                                                                         |                
gTTGATGGTTCACAGATCATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTa                  >  1:122742/1‑90 (MQ=255)
                tCATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATcaca  <  2:122742/90‑1 (MQ=255)
                                                                                         |                
GTTGATGGTTCACAGATCATGATGATATTAACTCAGGCGAAATTGGCTTTGATAAAAACATAAGATTTTTATCATTTTCTAATGAAATTATGGAAGAGATATCACA  >  NZ_CP009273/2999189‑2999294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: