| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,401,190 | 0 | C | G | 52.6% | 11.5 / 22.8 | 19 | G75G (GGC→GGG) | panF | sodium/pantothenate symporter |
| Reads supporting (aligned to +/- strand): ref base C (3/6); new base G (10/0); total (13/6) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.10e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.24e-03 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCC > NZ_CP009273/3401101‑3401275 | aTTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACgggctgggc < 1:207627/90‑1 (MQ=255) ttgCTGGCGGTGCCGCGCATCGTGACCTATATCAGTGGCGGTTGGTTTATAGGCGGGCCAGGAGCTGCTTACAAATACGGgctgggatgg < 1:277236/89‑1 (MQ=255) cGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTTTAAATACGGGCTGGGCTGGGGAtttc > 2:240510/1‑88 (MQ=255) tGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCCGGGGGTGCTTTTAAAAAAAGGCTGGGGTGGGGATtggtgg > 2:503387/1‑90 (MQ=255) ccGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCCGGAGCTGCTTTTAAAAAAGGGCTGGGGTGGGGGTTGCTGGGGATGGttt > 2:404643/1‑89 (MQ=255) ccGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTc < 1:481540/90‑1 (MQ=255) gcgACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAg < 1:114087/90‑1 (MQ=255) aCCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCtt < 1:120456/90‑1 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGGCAGGGGGTGCTTATAAAAAAGGGGTGGGGGGGGGATTGCTGGGGATGGTTTAGCTTCCTGCAGTcg > 1:108641/1‑89 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCCGGGGCTGCTTTTAAAAAAGGGGTGGGGGGGGGGTTGTTTGCGGTGATTCATCTTCCCTCAGTCt > 1:543038/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGGGGTGCTTTTAAAAACGGGGTGGGGTGGGGATTGCTGGGGGTGGTTTAGCTTCCTTCAGTCt > 1:99764/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTTTAAATACGGGCTGGGGTGGGGATTTTTGGCGGTGATTTAGCTTTCTGCAGGCt > 2:584469/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTTTAAATACAGGCTGGGGTGGGGATTTTTGGCGGTGATTCAGCTTCCTTCAGTCt > 1:463468/1‑90 (MQ=255) gTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGGTGGGGATTGCTGGCGATGATTCAGCTTCCTGCAGTCt > 2:140351/1‑90 (MQ=255) aGTTCGTTTATCGGCGGGCCAGGAGCTGCTTTTAAATACGGGCTGGGGTGGGGATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCtt > 2:561859/1‑90 (MQ=255) aGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCgat > 2:87812/1‑65 (MQ=255) aGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCgat < 1:87812/65‑1 (MQ=255) tCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGACTTTCa < 2:463468/90‑1 (MQ=255) gTTTATCGGCGGGCCCGGGGCTGCTTATAAATACGGGCTGGGGGGGGGATTTTTGGCGATGGTTTAGCTTCCTGCAGTCTGGCTTTCACt > 1:153400/1‑90 (MQ=255) aCGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGTTTCTTg > 1:277094/1‑90 (MQ=255) cGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTgc < 1:584469/90‑1 (MQ=255) ctgggctgggTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTgcgcgc < 2:195436/90‑1 (MQ=255) tgggctgggTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGcgcc < 1:404643/90‑1 (MQ=255) | ATTGTGCTGGCGATGACGCTCACCGCGACCTATATCAGTGCCAGTTCGTTTATCGGCGGGCCAGGAGCTGCTTATAAATACGGGCTGGGCTGGGTATTGCTGGCGATGATTCAGCTTCCTGCAGTCTGGCTTTCACTCGGTATTCTCGGCAAGAAGTTTGCGATTCTTGCGCGCC > NZ_CP009273/3401101‑3401275 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |