| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,613,627 | T→A | V84E (GTG→GAG) | marR → | multiple antibiotic resistance transcriptional regulator MarR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,613,627 | 0 | T | A | 100.0% | 53.2 / NA | 17 | V84E (GTG→GAG) | marR | multiple antibiotic resistance transcriptional regulator MarR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (8/9); total (8/9) | |||||||||||
CCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCA > NZ_CP009273/1613545‑1613711 | ccGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGAGGAAAgg > 2:157125/1‑90 (MQ=255) tGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGcc > 1:297664/1‑90 (MQ=255) aaCTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGa > 2:315525/1‑90 (MQ=255) aaaaGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGAACCCGa < 2:465946/90‑1 (MQ=255) aCTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACt > 1:190659/1‑90 (MQ=255) gACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTac > 2:110308/1‑90 (MQ=255) aTGCTGGATCGCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACcggc < 1:583410/90‑1 (MQ=255) ggATCGCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGgcggcgc < 1:151157/90‑1 (MQ=255) cGCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCa < 1:51114/90‑1 (MQ=255) gCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAg < 2:204709/50‑1 (MQ=255) gCCTGGTCTGTAAAGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAg > 1:204709/1‑50 (MQ=255) aaaGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGt < 1:54981/53‑1 (MQ=255) aaaGGCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGt > 2:54981/1‑53 (MQ=255) ggCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGc < 1:315525/90‑1 (MQ=255) ggCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGc < 2:437162/90‑1 (MQ=255) ggCTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGc > 2:475550/1‑90 (MQ=255) cTGGGAGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCa < 2:110467/90‑1 (MQ=255) | CCGGTTGAACTGAAAAAGGTATTGTCGGTCGACCTGGGAGCACTGACCCGTATGCTGGATCGCCTGGTCTGTAAAGGCTGGGTGGAAAGGTTGCCGAACCCGAATGACAAGCGCGGCGTACTGGTAAAACTTACCACCGGCGGCGCGGCAATATGTGAACAATGCCA > NZ_CP009273/1613545‑1613711 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |