| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 546,689 | 0 | T | G | 53.8% | 5.4 / 11.3 | 13 | S265R (AGT→AGG) | ybcF | carbamate kinase |
| Reads supporting (aligned to +/- strand): ref base T (1/5); new base G (7/0); total (8/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.66e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.13e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TGCCACACCGGATGAGTTAGCGCCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGTGAGTGGTTATGTCAGAAG‑CCGTGGTAAACCCGCGTGGATTGGGGCGTTATCGCGAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTAT > NZ_CP009273/546617‑546778 | tGCCACACCGGATGAGTTAGCGCCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGGGAGGGGGTATGTTAGAAA‑CCg > 2:689646/1‑90 (MQ=255) cacCGGATGAGTTAGCGCCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGGGGGGGGGTTTGTTAGAAG‑ACggggga > 2:377453/1‑88 (MQ=255) ggATGAGTTAGCGCCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGTGGGGGGGTTTGTCAGAAA‑CCGTGGGAAAcc > 1:193683/1‑90 (MQ=255) gAGTTAGCGCCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGTGAGTGGTTATGTCAGAAG‑CCGTGGTAAACCcgcg < 1:60984/90‑1 (MQ=255) tAGCGCCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGTGGGGGGGTATGTCAGAAA‑CCGTGGGAAAACCCCggggg > 1:718493/1‑89 (MQ=255) gcgcCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGTGAGTGGTTATGTCAGAAG‑CCGTGGTAAACCCGCGTGGAtt < 1:200925/90‑1 (MQ=255) gcgcCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGGGGGGGGGTTTGTTAGAAGCCCGGGGAAAACCCCCgggggt > 2:277825/1‑88 (MQ=255) cGATGGTTCGATGGGGCCGAATGTAACGGCGGTGAGTGGTTATGTCAGAAG‑CCGTGGTAAACCCGCGTGGATTGGGGCGTTATCGCGAAt < 2:718493/90‑1 (MQ=255) tCGATGGGGCCGAATGTAACGGCGGTGAGGGGGTTTTTCAGGAA‑CCCTGGGAAAACCCCGTGGGGTGGGGGGGTTTCGCGAATTTAaaag > 1:431093/1‑90 (MQ=255) tGGGGCCGAATGTAACGGCGGTGAGTGGTTATGTCAGAAG‑CCGTGGTAAACCCGCGTGGATTGGGGCGTTATCGCGAATTGAAGAGACGc < 1:546033/90‑1 (MQ=255) ggCCGAATGTAACGGCGGGGGGTGGGTTTTTTAAAAG‑CCGGGGTAAACCCCCCGGGGTTGGGGGGGTATTGCGAATTGAAGAGACggcgg > 1:616772/1‑86 (MQ=255) ggTGAGGGGTTATGTCAGAAG‑CCGTGGTAAAACCGCGGGGGTTGGGGGGGTATCGCGAATTTAAGAGAAGCTGGGGGGGGGAgggggggg > 2:182553/1‑88 (MQ=255) gTGAGTGGTTATGTCAGAAG‑CCGTGGTAAACCCGCGTGGATTGGGGCGTTATCGCGAATTGAAGAGACGCTGGCGGGCGAAGCGGGGAcc < 1:187920/90‑1 (MQ=255) tGGTTATGTCAGAAG‑CCGTGGTAAACCCGCGTGGATTGGGGCGTTATCGCGAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTAt < 2:567092/90‑1 (MQ=255) | TGCCACACCGGATGAGTTAGCGCCATTTGCCAAAGCCGATGGTTCGATGGGGCCGAATGTAACGGCGGTGAGTGGTTATGTCAGAAG‑CCGTGGTAAACCCGCGTGGATTGGGGCGTTATCGCGAATTGAAGAGACGCTGGCGGGCGAAGCGGGGACCTGTAT > NZ_CP009273/546617‑546778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |