| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,326,714 | 0 | T | C | 53.3% | 7.6 / 11.3 | 15 | G45G (GGA→GGG) | adiC | arginine/agmatine antiporter |
| Reads supporting (aligned to +/- strand): ref base T (4/3); new base C (0/8); total (4/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.56e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.72e-04 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TAAGAACCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGAC > NZ_CP009273/4326628‑4326792 | taagAACCACCAGGACTTGGGTCGAGTAACGACATTTTGGCGTATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAAccatcca > 1:344874/1‑90 (MQ=255)taagAACCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAAccatcca > 2:82594/1‑90 (MQ=255) aaCGACTTTTGGGCGTATCCCACCGAGACCCCCAGGCCCCCGAAAATCGCCCCCACCCACCCAAAAATGGCAACCCCGCCAGTAGAGGcc < 2:177020/90‑1 (MQ=255) cGTATCCCATCGAGCCCCCCAGTGCACCGAAAACCGCCACCACCCATCCAAAAATGCCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTa < 2:91532/90‑1 (MQ=255) tatcCCATGGAGACCCCCAGTGCCCCGATAATCGTCCCCAACCACCAAAAAAGGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAAc < 1:409798/90‑1 (MQ=255) caccGAGACCCCCAGTGCCCCGATAACCGCCACCACCCACCCAAAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGaaa < 1:386260/87‑1 (MQ=255) gagCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACAcc > 1:449879/1‑90 (MQ=255) ccccAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGa > 1:134614/1‑90 (MQ=255) gccggTGCACCAATAATCGCCCCCACCCACCAAAAAATGCCAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGAc < 2:716413/86‑1 (MQ=255) cccGGTGCCCCAATAATCGCCACCAACCACCCAAAAAGGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGAc < 1:385962/90‑1 (MQ=255) cccAGTGCACCGATAATCGTCACCAACCATCCAAAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGAc < 1:82594/90‑1 (MQ=255) cccAGTCCACGAATAATCGTCCCCACCCATCAAAAAAGGGCAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGAc < 2:134614/90‑1 (MQ=255) cAGTCCACCAAAAATCGCCACCAACCACCAAAAAATGACAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGAccc < 2:17457/90‑1 (MQ=255) ggTGCCCCAAAAATCGCCACCAACCACCAAAAAAGGGCAACCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGAcccc < 1:307796/89‑1 (MQ=255) aCCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCataat > 2:344785/1‑90 (MQ=255) gATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAatatc > 1:716413/1‑89 (MQ=255) gcccccacccacCCATAAAGGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGac < 1:598747/86‑1 (MQ=255) cccaccacCCACCAAAAAAGGACAACCCCGCCAGTAGAGGCCAGGTTTGCAGGAAACAGAAAAACACCTGACCCCATAATATTCCCCGac < 2:49855/88‑1 (MQ=255) | TAAGAACCACCAGGACTTGGGTCGAGGAACGACATTTTGGCGTATACCATCGAGAGCCCCAGTGCACCGATAATCGTCACCAACCATCCATAAATGGCAATCCCGCCAGTAGAGGCCAGGTTTGCAGGTAACAGAAAAACACCTGACCCCATAATATTCCCCGAC > NZ_CP009273/4326628‑4326792 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |