| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | = 270859 | NA (NA) | 16 (0.740) | 14/162 | 0.4 | 69.8% | intergenic (‑67/‑177) | BW25113_RS01325/mmuP | IS5‑like element IS5 family transposase/S‑methylmethionine permease |
| ? | NZ_CP009273 | = 481485 | 7 (0.320) | coding (269/648 nt) | acrR | multidrug efflux transporter transcriptional repressor AcrR | |||||
GAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTG > NZ_CP009273/481397‑481574 | gagaTCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGg < 1:294899‑M2/90‑2 (MQ=255) agaTCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGga > 1:342020‑M2/1‑88 (MQ=255) gaTCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAagaga < 2:454987/90‑1 (MQ=255) cTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaaca < 2:100191‑M2/90‑14 (MQ=255) cTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaaca > 1:109424‑M2/1‑77 (MQ=255) cTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaaca > 1:304042‑M2/1‑77 (MQ=255) gTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaag < 1:662218‑M2/90‑16 (MQ=255) tCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagt > 2:586763‑M2/1‑74 (MQ=255) acatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAATTCATGTTCTTg > 1:141224‑M1/63‑90 (MQ=255) aaTATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatat < 2:4504‑M2/90‑26 (MQ=255) aaTATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatat > 1:40976‑M2/1‑65 (MQ=255) aaTATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGaa > 1:5273/1‑90 (MQ=255) ttGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCa > 1:526924/1‑90 (MQ=255) gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAATTCATGTTCTTGAATCCAc > 1:75451‑M1/56‑90 (MQ=255) gTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACgg < 2:494171/90‑1 (MQ=255) tgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTg > 1:266261‑M1/52‑90 (MQ=255) tgactgagtcagccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACaga > 2:513597‑M1/47‑90 (MQ=255) ttGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 1:108601‑M2/90‑45 (MQ=255) ttGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatct < 1:176559‑M2/90‑45 (MQ=255) aGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 2:609941‑M2/1‑43 (MQ=255) gccgagaagaatttccccgcttattcgcaccttccTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTc > 2:148739‑M1/36‑90 (MQ=255) cAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccat > 1:4504‑M2/1‑38 (MQ=255) aaTTCCCTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacag > 2:431006‑M2/1‑31 (MQ=255) tttccccgcttattcgcaccttccTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATg > 1:377605‑M1/25‑90 (MQ=255) ttCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATg < 1:134161/90‑1 (MQ=255) cccTGGCGATCCACTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggtt > 2:294899‑M2/1‑27 (MQ=255) aCTCTCAGTATTAAGgaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca > 1:100191‑M2/1‑15 (MQ=255) ttccTTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATg < 1:489871‑M1/86‑1 (MQ=255) tAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAAt > 1:532588/1‑90 (MQ=255) aaGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAAtt > 1:405342/1‑90 (MQ=255) ggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcg < 1:576300‑M2/90‑90 (MQ=255) | GAGATCTGGGAACTGTCAGAATCCAATATTGGTGAACTAGAGCTTGAGTATCAGGCAAAATTCCCTGGCGATCCACTCTCAGTATTAAGAGAGATATTAATTCATGTTCTTGAATCCACGGTGACAGAAGAACGGCGTCGATTATTGATGGAGATTATATTCCACAAATGCGAATTTG > NZ_CP009273/481397‑481574 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |