Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3900164	3900171	8	2 [0]	[1] 2	bglG/phoU	transcriptional antiterminator BglG/phosphate signaling complex protein PhoU

ATGCTCGCAGTTATTAACTTTGTGTAATTTTAGGAATTTATAAAGT  >  NZ_CP009273/3900118‑3900163                                              | aTGCTCGCAGTTATTAACTTTGTGTAATTTTAGGAATTTATAAAGt  >  1:5766/1‑46 (MQ=255) aTGCTCGCAGTTATTAACTTTGTGTAATTTTAGGAATTTATAAAGt  <  2:5766/46‑1 (MQ=255)                                              | ATGCTCGCAGTTATTAACTTTGTGTAATTTTAGGAATTTATAAAGT  >  NZ_CP009273/3900118‑3900163

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑