Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	4531449	4531515	67	3 [1]	[1] 2	fimB/fimE	type 1 fimbria switch DNA invertase FimB/type 1 fimbria switch DNA invertase FimE

ATCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTACACATCACTTAAAATCTCCTGTTTCCGCAC  >  NZ_CP009273/4531512‑4531605     |                                                                                          atCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTACACATCACTTAAAATCTCCTGTTTcc      >  1:421309/1‑90 (MQ=255)     aTACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTACACATCACTTAAAATCTCCTGTTTCCGCAc  >  2:558271/1‑90 (MQ=255)     |                                                                                          ATCCATACAAAATACAATGGTTTATGTTCTTCAAAATAAATAAACAAAATCATTCATAAATTTACACATCACTTAAAATCTCCTGTTTCCGCAC  >  NZ_CP009273/4531512‑4531605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑