Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	3798196	3798236	41	5 [1]	[0] 2	rfaS	LPS core biosynthesis protein RfaS

ATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCAAAACTTTATGACAGTTAATATTTTTTAATA  >  NZ_CP009273/3798106‑3798223                                                                                          |                             ataAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCaaa                              <  1:430927/90‑1 (MQ=255) ataAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCaaa                              <  2:589217/90‑1 (MQ=255)                             tatCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCAAAACTTTATGACAGTTAATATTTTTTAata  >  2:522603/1‑90 (MQ=255)                                 gAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCaaa                              >  1:499037/1‑58 (MQ=255)                                 gAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCaaa                              <  2:499037/58‑1 (MQ=255)                                                                                          |                             ATAAATCTATGCTCAAAATCATATATAATATCGAAATAATTCGCGTTATCAAGAATAAAATCTTCGCCAACAGTATTTCTTAGAAGCAAAACTTTATGACAGTTAATATTTTTTAATA  >  NZ_CP009273/3798106‑3798223

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑