| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,622,307 | 0 | T | G | 55.6% | 11.3 / 16.7 | 18 | G178G (GGT→GGG) | ydfG | bifunctional NADP‑dependent 3‑hydroxy acid dehydrogenase/3‑hydroxypropionate dehydrogenase YdfG |
| Reads supporting (aligned to +/- strand): ref base T (4/4); new base G (10/0); total (14/4) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.29e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.74e-03 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAAGCGTTTGTTCGTCAGTTTAGCCTGAATCTGCGTACGGATCTGCATGGTACGGCGGTGCGCGTCACCGACATCGAACCGGGTCTGGTGGGTGGTACCGAGTTTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAGCAGAAAAAACCTATCAAAATACCGTTGCATTG > NZ_CP009273/1622224‑1622394 | aaaGCGTTTGTTCGTCAGTTTAGCCTGAATCTGCGTACGGATCTGCATGGTACGGCGGTGGGCGTCACCCACATCGAACCGGGGCtgggg > 2:309793/1‑88 (MQ=255) aGCGTTTGTTCGTCAGTTTAGCCTGAATCTGCGTACGGATCTGCATGGTACGGCGGTGCGCGTCACCGACATCGAACCGGGGCTgggggg > 2:212984/1‑90 (MQ=255) tGTTCGTCAGTTTAGCCTGAATCTGCGTACGGATCTGCATGGTACGGCGGTGCGCGTCACCGACATCGAACCGGGTCTGGTGGGTGGTAc < 1:498264/90‑1 (MQ=255) ttCGTCAGTTTAGCCTGAATCTGCGTACGGATCTGCATGGTACGGCGGTGCGCGTCACCGACATCGAACCGGGTCTGGTGGGTGGTACCg < 1:309793/90‑1 (MQ=255) gTCAGTTTAGCCTGAATCTGCGTACGGATCTGCATGGTACGGCGGTGCGCGCCACCCACATCGAACCGGGGCTGGTGGGGGGGACCGAGt > 2:604885/1‑90 (MQ=255) aTCTGCATGGTACGGCGGTGCGCGTCACCGACATCGAACCGGGTCTGGTGGGTGGTACCGAGTTTTCCAATGTCCGCTTTAAAGGCGATg < 1:270899/90‑1 (MQ=255) cTGCATGGTACGGCGGTGCGCGTCACCGACATCGAAACGGGGCTGGTGGGGGGGACCGGGGTTTCCCATGTCCGCCTTAAAGGCGATGAc > 1:228789/1‑90 (MQ=255) gTACGGCGGTGCGCGTCACCGACATCGAACCGGGGCTGGGGGGTGGTACCGAGGTTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAg > 1:307422/1‑90 (MQ=255) gTACGGCGGTGCGCGTCACCGACATCGAACCGGGGCTGGGGGGGGGGACCGGGGTTTCCAATGTCCCCTTTAAAGGCGGTGACGGGAAAg > 1:591045/1‑90 (MQ=255) gTACGGCGGTGCGCGTCACCGACATCGAAACGGGGCTGGGGGGGGGGACCGAGGTTTTCAATGTCCGCTTTTAAGGCGGTGACGGGAAAg > 1:108534/1‑90 (MQ=255) gTACGGCGGTGCGCGGCACCGACATCGAAACGGGGCTGGGGGGGGGGACCGAGGTTTTCAATGTCCCCTTTTAAAGCGATGACGGGaaaa > 1:130493/1‑89 (MQ=255) tACGGCGGTGCGCGTCACCGACATCGAACCGGGTCTGGTGGGTGGTACCGAGTTTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAGc < 2:222354/90‑1 (MQ=255) gcggTGCGCGTCACCGACATCGAACCGGGGCTGGGGGGGGGTACCGAGTTTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAGCAGaa > 1:100209/1‑90 (MQ=255) gcgcGTCACCGACATCGAACCGGGTCTGGTGGGGGGTACCGAGTTTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAGCAGAAAAAAc > 2:147641/1‑90 (MQ=255) gcgcGTCACCGACATCGAACCGGGTCTGGTGGGGGGTACCGAGGTTTTCAATGTCCGCTTTAAAGGGGGTGACGGGAAAGCAGAAAAAAc > 1:455580/1‑90 (MQ=255) gcgcGTCACCGACATCGAACCGGGGCTGGTGGGGGGTACCGGGGTTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAGCAGAAAAAAc > 1:222354/1‑90 (MQ=255) ggTCTGGTGGGTGGTACCGAGTTTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAGCAGAAAAAACCTATCAAAATACCGTTGCATTg > 1:382973/1‑90 (MQ=255) ggTCTGGTGGGTGGTACCGAGTCTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAGCAGAAAAAACCTATCAAAATACCGTTGCATTg > 1:99516/1‑90 (MQ=255) | AAAGCGTTTGTTCGTCAGTTTAGCCTGAATCTGCGTACGGATCTGCATGGTACGGCGGTGCGCGTCACCGACATCGAACCGGGTCTGGTGGGTGGTACCGAGTTTTCCAATGTCCGCTTTAAAGGCGATGACGGTAAAGCAGAAAAAACCTATCAAAATACCGTTGCATTG > NZ_CP009273/1622224‑1622394 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |