| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,058,940 | 0 | T | A | 50.0% | 11.7 / 15.0 | 22 | T63S (ACC→TCC) | yihO | MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (10/1); new base A (0/11); total (10/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.40e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGA > NZ_CP009273/4058861‑4059025 | aaGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTc > 1:198686/1‑90 (MQ=255)aaGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTc > 1:200429/1‑90 (MQ=255)aaGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTc > 2:313676/1‑90 (MQ=255) aGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTCg > 2:450297/1‑90 (MQ=255) ggACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTCGcc < 2:306813/90‑1 (MQ=255) aCGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTCGccac > 2:82824/1‑90 (MQ=255) ttAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTCGCCACCAGAAAGATAATc > 2:125950/1‑90 (MQ=255) ttAGCCCAAATTTTTTTCCGCGAGTCGAAAAAAAACCGGGGGAGCATATGGGAAAACGGGGAAAAAACCTCCCCCACAAAAAAAATaacc < 1:119681/90‑3 (MQ=255) gCCAAATTTTTTCCCGCGAGTCGAGAAAAAATCCGGTGAGCATATCGGAAACCGGGGAAAAAACCTCCCCCACAAAAAAGATAATCCCGc < 1:178211/90‑1 (MQ=255) cAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCAt > 2:142476/1‑90 (MQ=255) cgcgAGTCAAGAAAAAACCCGGTGAGCATATCGGAAACCGCGAAAAAAACCTCCCCCACAAAAAAAATAACCCCGCCATAGTAAGCAGGc < 1:125950/90‑1 (MQ=255) cgcgAGTCAAAAAAAAACCCGGTGACAATATCGAAAAACGCGAAAAAAACCTCCCCCACAAAAAAAAAAACCCCGCCATAGTAAGCAGGc < 1:313676/90‑1 (MQ=255) gggagtcgaaaAAAAACCCGGTGAGAATACCGGAAAACGGGAAAAAAACCTCCCCCACAAAAAAAATAACCCCGCCATAGTAAGCAGGCa < 1:451900/88‑1 (MQ=255) gAGCATATCGGTAAACGCGGTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATaaaa > 1:127444/1‑90 (MQ=255) cATATCGGTAAACGCGGTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAAttt > 1:105471/1‑90 (MQ=255) tatCGGAAACCGCGAAAAAAAACTTCGCCACAAAAAAGATAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTga < 2:9674/90‑1 (MQ=255) tCGGTAAACGCGGTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTgagg > 2:94584/1‑90 (MQ=255) tCGGAAAACGCGGAAAAAACCTCCCCCCCAAAAAAGATAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTgagg < 2:198686/90‑1 (MQ=255) gaaaaCGCGGAAAAAATCTTCCCCACAAAAAAGAAAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGgaga < 2:438947/88‑1 (MQ=255) gTAAACGGGGAAAAAACCTCCCCCACCAAAAAAAAAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGgaga < 1:61177/90‑1 (MQ=255) aaaaCGCGAAAAAAAACTCCCCCCCAAAAAAAAAAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGAt < 2:200429/89‑1 (MQ=255) gcgGAAAAAAACTTCGCCACAAAAAAGATAACCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACaga < 2:19751/90‑1 (MQ=255) | AAGGGACGAAATTTGCCTTTAGGCCCAATATTTTTCCGCGAGTCGAGTAAAAATCCGGTGAGCATATCGGTAAACGCGGTAAAAAACTTCGCCACCAGAAAGATAATCCCGCCATAGTAAGCAGGCATCCCTAATTCATCGGTATAAAATTTGAGGAGATACAGA > NZ_CP009273/4058861‑4059025 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |