| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,276,591 | 0 | A | C | 57.1% | 11.8 / 13.7 | 14 | W237G (TGG→GGG) | acs | acetate‑‑CoA ligase |
| Reads supporting (aligned to +/- strand): ref base A (6/0); new base C (0/8); total (6/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.33e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.05e-03 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGG > NZ_CP009273/4276506‑4276675 | gAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCcaccac < 2:423176/90‑1 (MQ=255) aTAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCt > 1:233364/1‑90 (MQ=255) ctcccgccgGGTGCTGACCGCTCGTTTCCCCACCCGGGTCGTCCCCCCACGGGCCGCCCCCTTCCTGCCAGTCATTTTTCCCGCCAGTAc < 1:26340/87‑1 (MQ=255) ctcccGCCTGGCGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCCCCACAGGTCGCGCCCTTCCTGCCAGTCATTTTTCCCGCCAGTAc < 2:42598/87‑1 (MQ=255) ctTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTAc > 2:373548/1‑90 (MQ=255) ctTCCGCCTGGTGCTGATCGCCCGCTTGCTCAACCAGGTCGTGCCCCCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTAc < 2:115471/90‑1 (MQ=255) gCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTc > 1:293581/1‑90 (MQ=255) cccTGGTGCTGACCGCTCGTTTCCCCACCCAGGTCGTCCCCCCACAGGCCGCCCCCTTCCTGCCAGTAAATTTTCCCGCCAGTACGCTTc < 2:22700/89‑1 (MQ=255) gTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTac > 1:58751/1‑90 (MQ=255) gATCCCTCGCTTGCTCACCCAGGCCGGCCCCCCACGGGCCGCCCCCTTCCTGCCAGTCATTTTTCCCGCCAGTACGCTTCAGTAccacca < 2:64439/90‑1 (MQ=255) tcgctcgtTTGCTCACCCAGGTCGTGCCCCCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACcaca < 2:183915/90‑1 (MQ=255) tccctcgttTCCCCAACCAGGTCGTCCCCCCACGGGCCGCCCCCTCCCTGCCAGTAATTTTTCCCGCCAGTACGCTTCAGTACCACcaca < 2:244498/87‑1 (MQ=255) ccctcgctTGCCCAACCGGGTCGTCCCCCCACGGGCCCCCCCCTCCCTGCCAGTAATTTTTCCCGCCAGTACGCTTCAGTACCACCACAt < 2:293581/88‑1 (MQ=255) ctcgctTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGc > 1:183639/1‑90 (MQ=255) gTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCgg > 1:375920/1‑90 (MQ=255) | GAGGTGTAGAGAATAAACAGCGGATCTTCGGCGTTCATCTCTTCCGCCTGGTGCTGATCGCTCGCTTGCTCAACCAGGTCGTGCCACCACAGGTCGCGCCCTTCCTGCCAGTCAATTTTCCCGCCAGTACGCTTCAGTACCACCACATGCTCTACGCTGGTGACGTTCGG > NZ_CP009273/4276506‑4276675 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |