| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 2808944 = | 2 (0.090) | 22 (1.020) | 15/164 | 0.3 | 91.7% | coding (855/1557 nt) | gshA | glutamate‑‑cysteine ligase |
| ? | NZ_CP009273 | 3576788 = | NA (NA) | coding (391/417 nt) | BW25113_RS17825 | YrhA family protein | |||||
TTACGAGTACGTAGCGGGCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2809031‑2808944‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTC > NZ_CP009273/3576788‑3576867 TTACGAGTACGTAGCGGGCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGG < 1:354527/90‑1TTACGAGTACGTAGCGGGCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGG > 1:157475/1‑90 GTACGTAGCGGGCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGC > 1:396458/1‑90 TAGCGGGCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCA > 2:175351/1‑90 GGCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTA > 2:453102/1‑90 GCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTAC < 2:396458/90‑1 AACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTT < 1:175351/90‑1 AACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTT < 2:92754/90‑1 GGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTG > 2:145951/1‑90 GGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTT < 1:165791/86‑1 GGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTT > 2:165791/1‑86 GGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGT < 2:19766/64‑1 GGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGT > 1:19766/1‑64 GCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGT > 2:237839/1‑90 AACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGT < 1:8083/90‑1 CATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTT > 2:634670/1‑90 CATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTT > 2:98909/1‑90 GAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGC > 1:458287/1‑90 AGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT > 2:372097/1‑90 AGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT > 2:507693/1‑90 AGACGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCT > 2:98848/1‑90 CGGTAAGAGGGGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTC < 2:97982/90‑1 TTACGAGTACGTAGCGGGCCTTAAACAGGCAATCAAAACGCCATCGGAAGAGTACGCGAAGATTGGTATTGAGAAAGACGGTAAGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NZ_CP009273/2809031‑2808944‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGTGATGCTGCCAACTTACTGATTTAGTGTATGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTC > NZ_CP009273/3576788‑3576867 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |