| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 19797 = | NA (NA) | 15 (0.700) | 11/162 | 0.5 | 83.5% | intergenic (‑2/+14) | BW25113_RS25960/BW25113_RS00100 | fimbrial family protein/IS1‑like element IS1A family transposase |
| ? | NZ_CP009273 | = 2808953 | 3 (0.140) | coding (846/1557 nt) | gshA | glutamate‑‑cysteine ligase | |||||
CCGCTGCGGGTAACGCGTTTTGGACGAATCGGCGCGTACAGTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTACGTACTCGTAAAGATCGTTGAA > NZ_CP009273/2808864‑2809042 | gacagctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCTCTTACCg < 2:97982‑M1/10‑1 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCTCTTACCGTCt > 2:372097‑M1/78‑90 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCTCTTACCGTCt > 2:98848‑M1/78‑90 (MQ=255) agctgatagaaacagaagccactggagcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCTCTTACCGTCt > 2:507693‑M1/78‑90 (MQ=255) tAACGCGTTTTGGACGAATTGGCGCGTACAGTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatgactc < 2:645179‑M2/90‑11 (MQ=255) tAACGCGTTTTGGACGAATCGGCGCGTACAGTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatgactc > 1:151945‑M2/1‑80 (MQ=255) aCGCGTTTTGGACGAATCGGCGCGTACAGTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatgactcca < 1:388200‑M2/90‑13 (MQ=255) aCGAATCGGCGCGTACAGTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatgactccaacttattgata > 2:388200‑M2/1‑67 (MQ=255) cGAATCGGCGCGTACAGTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatgactccaacttattgatag > 1:93022‑M2/1‑66 (MQ=255) gcacctcaaaaacaccatcatacactaaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTActc > 1:458287‑M1/52‑90 (MQ=255) tACAGTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatgactccaacttattgatagtgttttatgttc > 2:560470‑M2/1‑54 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATg > 2:98909‑M1/44‑90 (MQ=255) aaaacaccatcatacactaaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATg > 2:634670‑M1/44‑90 (MQ=255) gTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatgactccaacttattgatagtgttttatgttcagat < 1:225452‑M2/90‑41 (MQ=255) accatcatacactaaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGtt < 1:8083‑M1/52‑1 (MQ=255) tCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatg < 1:440939‑M2/48‑7 (MQ=255) tCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatg > 2:440939‑M2/1‑42 (MQ=255) acactaaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGc > 2:237839‑M1/31‑90 (MQ=255) cactaaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGcc > 2:145951‑M1/30‑90 (MQ=255) gCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactt > 1:615198‑M2/1‑35 (MQ=255) aaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGcc > 2:165791‑M1/26‑86 (MQ=255) aaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGcc < 1:165791‑M1/61‑1 (MQ=255) aaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGtt < 2:92754‑M1/65‑1 (MQ=255) aaatcagtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGtt < 1:175351‑M1/65‑1 (MQ=255) gtaagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGc < 2:396458‑M1/71‑1 (MQ=255) taagttggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGcc > 2:453102‑M1/19‑90 (MQ=255) tggcagcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTa > 2:175351‑M1/14‑90 (MQ=255) gcatcaccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTACGTAc > 1:396458‑M1/9‑90 (MQ=255) tttGCAGCCTCTTACCGgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccg < 1:217421‑M2/90‑74 (MQ=255) accCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGcc < 2:19766‑M1/61‑1 (MQ=255) accCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGcc > 1:19766‑M1/4‑64 (MQ=255) ccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTACGTACTCGTaa < 1:354527‑M1/88‑1 (MQ=255) ccCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTACGTACTCGTaa > 1:157475‑M1/3‑90 (MQ=255) tctTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTAc > 1:79944/1‑76 (MQ=255) tctTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTAc < 2:79944/76‑1 (MQ=255) ccGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTACGTACTCGTAAAGATCGTTg < 1:545915/90‑1 (MQ=255) cGgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca > 2:519195‑M2/1‑2 (MQ=255) cGgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgaca < 2:581573‑M2/90‑89 (MQ=255) cGgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga < 2:374844‑M2/88‑87 (MQ=255) cGgtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacga > 1:374844‑M2/1‑2 (MQ=255) ggtaatgactccaacttattgatagtgttttatgttcagataatgcccgatgactttgtcatgcagctccaccgattttgagaacgacag < 2:415372‑M2/90‑90 (MQ=255) | CCGCTGCGGGTAACGCGTTTTGGACGAATCGGCGCGTACAGTTCGTTTTCAATCTGCAACACGTTGCTGTTGATTTGCAGCCTCTTACCGTCTTTCTCAATACCAATCTTCGCGTACTCTTCCGATGGCGTTTTGATTGCCTGTTTAAGGCCCGCTACGTACTCGTAAAGATCGTTGAA > NZ_CP009273/2808864‑2809042 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |