Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1363732	1363749	18	5 [0]	[1] 2	pspD	phage shock protein PspD

GGAAAGTTATGAATACTCGCTGGCAACAGGCCGGGCAAAAGGTAAAGCCTGGTTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGCAC  >  NZ_CP009273/1363642‑1363731                                                                                          | ggAAAGTTATGAATACTCGCTGGCAACAGGCCGGGCAAAAGGTAAAGCCTGGTTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGCAc  <  2:100256/90‑1 (MQ=255)                cTCGCTGGCAACAGGCCGGGCAAAAGGTAAAGCCTGGTTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGCAc  <  1:285932/75‑1 (MQ=255)                cTCGCTGGCAACAGGCCGGGCAAAAGGTAAAGCCTGGTTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGCAc  >  2:285932/1‑75 (MQ=255)                                            aaaGCCTGGTTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGCAc  >  1:92708/1‑47 (MQ=255)                                            aaaGCCTGGTTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGCAc  <  2:92708/47‑1 (MQ=255)                                                                                          | GGAAAGTTATGAATACTCGCTGGCAACAGGCCGGGCAAAAGGTAAAGCCTGGTTTCAAATTAGCAGGCAAGCTGGTACTTCTTACCGCAC  >  NZ_CP009273/1363642‑1363731

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑