| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,806,432 | 0 | A | C | 52.6% | 9.6 / 14.9 | 19 | T114T (ACA→ACC) | coaBC | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate‑‑cysteine ligase CoaBC |
| Reads supporting (aligned to +/- strand): ref base A (4/5); new base C (0/10); total (4/15) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.25e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.37e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
CCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCT > NZ_CP009273/3806354‑3806516 | cccTGCCATGGCAGATTTGATTGTCCGTGTTGCTGCCCGAATGGCGAATGACCTGGTATCGCCGATTTGTCTGGCTACACCTGCGCCTGt < 1:356306/90‑1 (MQ=255) gCCCGTGTTGCTGCCGGAATGGCGAATTACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAAc > 1:528509/1‑90 (MQ=255) ccGTGTTGTTGCGGGAAGGGGGATTGCCCTGGTACCGACGTTTTTCCTGGCTCCCCCTGCGCTTGTGGCCGGCCCCCCCGCCATGAACca < 1:442750/90‑1 (MQ=255) ccGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACca < 1:263651/90‑1 (MQ=255) ccGTGTTGCTGCCGGAAGGGCGAATGCCCTGGTATCGACGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCCCCCCGCCATGAACca < 2:199483/90‑1 (MQ=255) gtgtTGCGGCCGGAATGGGGAATGCCCTGGTATCGCCGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACcagc < 2:117418/90‑1 (MQ=255) gtgtTCCTGCGGGATGGGCAAATTCCTTGGTATCGAGGTTTTGTGGGGTTACACTGGGGCGGGGAGCCGTGCTCCCCGCCATGAACcagc < 2:528509/90‑1 (MQ=255) aaaTGCCCTGTTACCGACTTTTTGTCGGGCTACCCCTGCGCTTGTGGCCGTCCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGc < 2:456395/89‑1 (MQ=255) tgcccTGGTATCGACGTTTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAc < 1:579694/87‑1 (MQ=255) tGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCAc > 1:456395/1‑90 (MQ=255) cccTGGTACCGACGTTTTGTCTGGCTCCCCCGGCGCCTGTAGCCGTGCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACgc < 2:385030/89‑1 (MQ=255) gTATCGACGTTTTGTCTGGCTCCCCCTGCGCCTGTAGCCGTCCCCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 2:358448/90‑1 (MQ=255) gTATCGACGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:50101/90‑1 (MQ=255) gTATCGACGATTTGTCTGGCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:184003/90‑1 (MQ=255) gTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCAt < 1:113309/90‑1 (MQ=255) gacgaTTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACca < 2:173826/54‑1 (MQ=255) gacgaTTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACca > 1:173826/1‑54 (MQ=255) gacgaTTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAAttt > 1:245241/1‑90 (MQ=255) gCTACCCCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGtgcttgct < 1:14437/90‑1 (MQ=255) | CCCTGCCACGGCAGATTTGATTGCCCGTGTTGCTGCCGGAATGGCGAATGACCTGGTATCGACGATTTGTCTGGCTACACCTGCGCCTGTAGCCGTGCTCCCCGCCATGAACCAGCAGATGTACCGTGCCGCTGCCACGCAGCATAATTTAGAGGTGCTTGCT > NZ_CP009273/3806354‑3806516 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |